Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq97 282 5e-71 seq23 179 4e-40 seq430 167 3e-36 seq245 161 1e-34 seq29 136 5e-27 seq544 116 4e-21 >seq97 Length=49960 Score = 282 bits (312), Expect = 5e-71 Identities = 820/1239 (66%), Gaps = 45/1239 (4%) Strand=Plus/Minus Query 80538 ACCCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTA 80597 |||||||||||||| ||| | |||| || || ||||| || ||| | |||||||| Sbjct 19135 ACCCCACATGTCGTACTGGAGTTCACCCTGGGAAGCAGGAGAGCCGGCGTAGGTCTCGTA 19076 Query 80598 CGGGCCCTCCGTCTTG-GCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACT 80656 | ||| | | ||||| |||| ||| ||||| | ||| || || || || ||| || Sbjct 19075 GGTGCCGTGC-TCTTGAGCCAACTCGCACGATCGCTCAAGAGCGGCATGGTAGATGGTCT 19017 Query 80657 CAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCA 80716 | |||| ||||| | || |||| || ||||| | | ||||| |||| Sbjct 19016 CGAAGATCTGGACGTTCAATCGACGAGCCTCGGGCGATTCGAAGGCGTAACCCATGATCA 18957 Query 80717 TGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATC 80776 |||| | || || || |||||||| ||||| |||| |||||||| ||| |||| || | Sbjct 18956 TGAAGGCATCGGCAAGACCCTGAACACCGATACCGATAGGGCGGTGACGCATGTTAGAAC 18897 Query 80777 GCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAA 80836 | |||||| || ||||| |||| | ||||||| ||||| ||| | || | Sbjct 18896 GACGAGCCTCCTCAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTT-CTTGCAG 18838 Query 80837 CAACCCGTGT-AACATCATGAAGTTTCTGAAAGTCGAA----TTGGTTCCCCT-TC-ACA 80889 | || || ||| || || | || ||||| | ||||| | || | Sbjct 18837 ATAGCCTTGGCAACCTCGTGCAAACGCTTGTAGTCGTAGACCTTGGTGACAGGGTCGATG 18778 Query 80890 AATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTC---AGCATCTGTA 80946 || | ||||| | ||| || || ||||| || || ||||| || |||| ||||| Sbjct 18777 AAGGTGGGAAGAGCGATGGAGGCAAGGTTGCAAACAGCAACCTCATCGGGAGCA-CTGTA 18719 Query 80947 AACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTT 81006 ||||| ||| || |||||||| || || |||| || ||||| ||||| |||||||| Sbjct 18718 --CTCGATGATCTCAGTGCACAAGTTGGAGCACTTGATAGTACCGAGGTTCTTCTGGTTG 18661 Query 81007 GACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGAC 81066 |||||| |||| ||||||||||||| ||| | ||| |||| |||||| ||| ||| Sbjct 18660 GACTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCAGTCTCGGTCTGCGAC 18601 Query 81067 TTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCG---GAATTTGCCTTCG 81123 | ||||||||||| ||| | || | |||||| || |||| | | ||||| Sbjct 18600 TCGAGGATGGCGTACCAGAGCTTCTGAGCCTTG---ACGGTGCGCTTGGAACGACCTTCA 18544 Query 81124 GCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTG 81181 ||| | || |||| || | || |||| |||||| | || |||| ||| | | Sbjct 18543 GCCTCGTAACGCTCGTAGAGACGC-TCAAACTCCTCACCGTAGCAG-TCAGCGAGACCGG 18486 Query 81182 GGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAG 81241 |||||||||| |||||||| || ||| ||| || | ||| || ||||||||| Sbjct 18485 GGCACTCGTTGGGGCACATGAGCGACCATTCGCCGTTCTGCTCAACCCTCTTCATGAAGA 18426 Query 81242 CGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGT 81301 || || | |||||| ||| ||| || || ||| || | || || | ||| |||| Sbjct 18425 GATCGGGAACCCAGAGAGCGTAGAAGAGTTCACGGGCACGAACTTCTTCCTTACCGTGGT 18366 Query 81302 TGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGA 81361 | |||||| ||||| || || | || |||| ||||| ||||| | || | ||| | Sbjct 18365 TCTTGCGCAAGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAA 18306 Query 81362 TCGACCCCTTGCGACG------GCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATA 81415 | || | |||| |||||||||| |||||||||||| || ||| || | Sbjct 18305 AGGCACC---GGGACGCTTGTTACCACCCTGGTCGACGTAACGGGCGGTGTTGTTGAAGA 18249 Query 81416 CACGCAACATAGGGATGATACCAT--CTGACTGACCGTTCGTACCCACGATACGCGACCC 81473 |||| | ||| || | |||||| | ||||| |||||| || || | || ||| || Sbjct 18248 CACGAAGCATGGGAACGATACCGTTGCTGAC--ACCGTTGGTGCCGGCAATGTACGAGCC 18191 Query 81474 CTTGGCGCGCACCTTGC--TGATTG-AAAGACCGATGCCACCTGACCACTTTGAAATCTG 81530 | | || | ||| ||| || | ||| ||||| || | ||| || ||| Sbjct 18190 AGTACCTCGAA---TGCAGTGAATGTTCAAACCAATGCCGCCGGCGGTCTTGGAGATCAT 18134 Query 81531 AGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAA 81590 ||||| || | ||| || ||||| || ||||| || | |||||| ||| | Sbjct 18133 GGCACAGGTCTTGAGGGTGTCGTAAATGCCATCGATCGAGTCATCCTTCATGGCAACAAG 18074 Query 81591 GAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTG 81650 ||||||| || | |||||| | ||| || ||||| || ||||| | ||||| Sbjct 18073 GAAACAGGACGAGAGCTGAGGATGGGGAGTGCCAGCGTTGAAGAGGGTTGGCGAGGCGTG 18014 Query 81651 AATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACC 81710 | | || || | ||||| |||| || || || | | | || || | || Sbjct 18013 AGTAAAGTACTTTTGCGACATGAGGTTGTAAGTCTCGATAGCACTCTCGATGTCCTGGCC 17954 Query 81711 GTGAATACCGATAGCTACACGCATAAACATGTACTGGGG 81749 ||||||||| | ||| |||||||| | ||||| |||||| Sbjct 17953 GTGAATACCAACAGCGACACGCATGAGCATGTGCTGGGG 17915 Score = 93.3 bits (102), Expect = 5e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || || || ||||| | || |||||||| ||||||||||| ||||| | |||||| ||| Sbjct 19641 GTACGAAGGTAGTAGGTACCGGTCTTGAGACCCTTCTTCCAACCGTAGAAGTGCATCGAA 19582 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 | | || | | ||||| | || | |||||| || || |||||||| || ||| Sbjct 19581 GTCAACTGACCGAAAGTGGGAGCCGACAAGTGGATGTTGAGCGATTGAGACTGGCAAATG 19522 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 ||||| || || || || ||||| || || || | ||| || | || ||||| || || Sbjct 19521 AAAGCACCTCGGTCAGCGGCCATGTCGATGATAGCCTTCTGGGAGATCTCCCAAACAGT 19463 >seq23 Length=89368 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | |||||||||||||| ||||||||||| || || | Sbjct 50372 ATGCAAATCTTCGTCAAGACTTTGACCGGCAAGACTATCACTCTTGAGGTCGAATCCTCT 50313 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || |||||||| |||||||| ||||| || |||||| Sbjct 50312 GACACCATCGACAACGTTAAGGCCAAGATTCAGGATAAGGAGGGTATTCCCCCTGACCAG 50253 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || ||||| || || |||| |||||||| | ||||| || Sbjct 50252 CAGCGCCTTATCTTTGCAGGCAAGCAGCTTGAAGATGGCCGTACCCTTTCCGACTACAAC 50193 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| ||||| | ||||| ||| | |||||||| || || Sbjct 50192 ATTCAGAAGGAGTCCACCTTGCATCTTGTCCTCCGTCTTCGTGGCGG 50146 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || ||||||||||| || || || ||||| ||||| Sbjct 50600 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCG 50541 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || ||||||||||| || || || || || ||| Sbjct 50540 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCTGATCAG 50481 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||||||||| |||||||||| || || || | ||||| || Sbjct 50480 CAGCGACTCATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACTCTCTCGGACTACAAC 50421 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || |||||||| || || || | || || || ||||| Sbjct 50420 ATCCAGAAAGAGTCCACTCTCCACCTTGTTCTCCGCCTCCGTGGTGG 50374 >seq430 Length=15258 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| | ||||||||||| |||||||| || || ||||| Sbjct 1211 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 1270 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || || ||||| ||||| || ||||| || |||||| Sbjct 1271 GACACTATCGACAATGTTAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 1330 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| ||||| || | || ||||| | || || || Sbjct 1331 CAGCGTCTTATCTTTGCTGGAAAGCAGCTCGAAGACGGCCGAACCCTCTCGGATTACAAC 1390 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||||||||| | ||||| || |||| | || ||||| Sbjct 1391 ATCCAAAAGGAATCCACGTTGCATCTCGTTCTGCGATTGCGAGGTGG 1437 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||| ||||| || || || ||||| ||||| Sbjct 983 ATGCAGATCTTCGTAAAGACTCTGACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCC 1042 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || ||||||||||||||||| |||||||| || ||| Sbjct 1043 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCAG 1102 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||| || || ||||| || ||||||| || ||||| | ||||| || Sbjct 1103 CAGCGTCTCATTTTCGCCGGAAAGCAGCTTGAGGATGGACGAACCCTTTCGGACTACAAC 1162 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || | ||||| || ||||| Sbjct 1163 ATCCAGAAGGAGTCGACCCTCCACCTGGTTCTCCGTCTCCGTGGTGG 1209 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||||||||| || || ||||| || ||| | || || || || Sbjct 1439 ATGCAGATCTTTGTCAAGACGCTCACAGGAAAGACCATCACTTTGGAAGTCGAATCTTCG 1498 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||||| || |||||||||||||| || |||||||| |||||| Sbjct 1499 GACACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGTATTCCTCCTGACCAG 1558 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | |||||||||||||| || | ||||||| || || || | || || ||| Sbjct 1559 CAGCGATTGATTTTTGCTGGTAAACAGTTGGAGGATGGACGAACTCTGTCTGATTACAAT 1618 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| |||||||| || || ||||||||||| || || Sbjct 1619 ATTCAGAAGGAGAGTACTCTTCACCTTGTTTTGCGTCTTCGTGGCGG 1665 >seq245 Length=26962 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || || ||||| || || || ||||| ||||| Sbjct 23892 ATGCAGATCTTTGTTAAAACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCTTCG 23951 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || ||||||||||| || ||||| || || ||| Sbjct 23952 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 24011 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || ||||| ||||| |||| ||| ||||| | || || || Sbjct 24012 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACCCTCTCGGATTACAAC 24071 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| ||||| || ||| | || ||||| ||||| Sbjct 24072 ATCCAGAAGGAGTCCACCCTTCACCTCGTCCTCCGCCTTCGTGGTGG 24118 >seq29 Length=80376 Score = 136 bits (150), Expect = 5e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || ||||| || || |||||||| ||||| || | ||| | || | ||||| Sbjct 50039 ACAGGTAAGACCATCACCCTTGAGGTGGAGTCTTCCGACACCATCGACAACGTCAAGGCC 49980 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| || || || |||||||||||||| || || || |||||| Sbjct 49979 AAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGTCTCATCTTCGCCGGTAAG 49920 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||| | || ||||| | ||||| || |||| ||||| || || || || Sbjct 49919 CAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCTACCCTCCAC 49860 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | ||||| || ||||| Sbjct 49859 CTCGTCCTCCGTCTCCGTGGTGG 49837 >seq544 Length=9533 Score = 116 bits (128), Expect = 4e-21 Identities = 163/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 64666 AAGGCTGAATGGGCCATCCGGTGGATGA---ATCGTGGGTCGTCGTTTGGTCAGCGTCTC 64722 |||||||| |||||| |||| ||||| | | || | | | |||| |||||||| Sbjct 3657 AAGGCTGACTGGGCCCTCCGCTGGATTAGCGACCGAAAGGCCACCTTTGCAGAGCGTCTC 3598 Query 64723 GCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGG 64782 | || ||||| || || || || ||||| || || || ||| ||||| |||||| Sbjct 3597 GTTGCCTTTGCGGCCGTAGAGGGTATCTTCTTCTCCGGTTCTTTCGCCTCTATCTTCTGG 3538 Query 64783 CTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGAC 64842 || || ||||| || || ||||| ||||| | || || |||||||| ||||| || ||| Sbjct 3537 CTCAAGAAGCGTGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGCGAC 3478 Query 64843 GAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTCAAG 64890 ||||| || ||| || || || ||| ||||||||||||||| Sbjct 3477 GAGGGTCTTCACACCGACTTCGCCTGCCTCCTCTTCAGCCACCTCAAG 3430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570244479246640