Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq278 134 1e-26 >seq278 Length=24804 Score = 134 bits (148), Expect = 1e-26 Identities = 399/615 (65%), Gaps = 38/615 (6%) Strand=Plus/Plus Query 29834 AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCC 29893 ||| |||| ||||| || || | ||||||||| |||| ||||| || |||| ||| Sbjct 16208 AGTTTGGGGAAGGGAAGTGGTTCTCGTTCGAGCTGAATCTTGAGCGGCTCTACGTGATCT 16267 Query 29894 AGGTAGACGTGAGCGTCTCCCAGGTTGT--GGACAAACTCTCCCGGTTCTAGCCCGGTGA 29951 ||||||||||||||| |||| ||| | || | || || || | |||| Sbjct 16268 TTGTAGACGTGAGCGTCACCCA--TTGAAAGAACGAGTTCCTTTGGCTCGCAATCAGTGA 16325 Query 29952 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCC 30011 | | ||| |||||||| ||||| | || |||||| || ||||| ||||| || || | | Sbjct 16326 CTTTAGCGATCATGTAAGTGAGCAAAGCGTAGCTAGCAATGTTGAAGGGGACTCCCAATC 16385 Query 30012 CCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT---------CT----CCGTCG 30058 | | || | || | ||||| | |||||||||||||| || || | | Sbjct 16386 CAAGATCGCAGGAACGTTGGTACATCTGACACGAGAGCTGCTTCCTGCCTTGACCCTTGG 16445 Query 30059 C-------TCA----------CGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCA 30101 | ||| || | || ||||| | ||| || || |||||||||| Sbjct 16446 CATATGCGTCAAGGTTGGAGACGAAGAATTGACAGAACATGTGACAAGGTGGAAGAGCCA 16505 Query 30102 TGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGT 30161 ||||| | |||||||||||||| |||| | | ||| | | || ||||||| Sbjct 16506 TGAGGGAGAGATCTTTGGGGTTCCATGCGCTGAGCAAGATTCTGCGATCGGTAGGGTTGT 16565 Query 30162 TCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC--TGC 30219 || |||| ||| | | | | | || || || || ||| || | |||||| || Sbjct 16566 TCTTGATCTTGTCGATGACATCGCGGAGTTGGTCGACGCCCTGACCGGTGTAGTCGGTGT 16625 Query 30220 CCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAG 30279 | || || |||| || || || ||||| | ||| ||||| ||||| || || |||| Sbjct 16626 CACAATCTC--TGTATTCGGCGCCAAAATGACGCCATTGGAAACCGTAGACTGGACCCAA 16683 Query 30280 GTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGC 30339 ||| || || ||||||| || || | ||| | || |||| ||||||||| | Sbjct 16684 GTCACCTTCCCTTCTGTGCTGCAATCCTCGAGAGTCAAGGAACTCTCGTGAACCGTTGCC 16743 Query 30340 GTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAA 30399 |||||||| | || || || || | |||| ||||||| || || || || Sbjct 16744 ATCCCAGATGTGCACACCTTTGTCTGTGAGCAACTTGGAGTCGGTCTTTCCAGCAACAAA 16803 Query 30400 CCACAGCAGCTCCTC 30414 ||| || |||||||| Sbjct 16804 CCAGAGTAGCTCCTC 16818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406264609706724