Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq430 138 1e-27 seq23 113 4e-20 seq245 109 5e-19 >seq430 Length=15258 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || ||||| ||||||||||| ||| | || || || || ||||| | || Sbjct 982 CATGCAGATCTTCGTAAAGACTCTGACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTC 1041 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || || | ||||| || ||||| ||||| || || || || |||||||| Sbjct 1042 CGACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCA 1101 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | |||||| || || | || || | ||| |||| || ||||| Sbjct 1102 GCAGCGTCTCATTTTCGCCGGAAAGCAGCTTGAGGATGGACGAACCCTTTCGGACTACAA 1161 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||||||| | || ||||| | ||| | || ||||| || Sbjct 1162 CATCCAGAAGGAGTCGACCCTCCACCTGGTTCTCCGTCTCCGTGGTGGTAT 1212 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||||||||| | |||||||| ||||| || | || Sbjct 1211 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 1270 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || || |||||||| || || || || Sbjct 1271 GACACTATCGACAATGTTAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 1330 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || || | |||||| | ||| | || ||||||||| Sbjct 1331 CAGCGTCTTATCTTTGCTGGAAAGCAGCTCGAAGACGGCCGAACCCTCTCGGATTACAAC 1390 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || || ||| | ||| |||| ||||| ||||| || Sbjct 1391 ATCCAAAAGGAATCCACGTTGCATCTCGTTCTGCGATTGCGAGGTGGTAT 1440 >seq23 Length=89368 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||| ||||||||||| |||| |||||||| || ||| | || Sbjct 50372 ATGCAAATCTTCGTCAAGACTTTGACCGGCAAGACTATCACTCTTGAGGTCGAATCCTCT 50313 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || ||||| || || || || || || || || || Sbjct 50312 GACACCATCGACAACGTTAAGGCCAAGATTCAGGATAAGGAGGGTATTCCCCCTGACCAG 50253 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || ||||| || | ||||| | ||| ||||||| |||||| Sbjct 50252 CAGCGCCTTATCTTTGCAGGCAAGCAGCTTGAAGATGGCCGTACCCTTTCCGACTACAAC 50193 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| ||||| ||| | || | ||| | || || || Sbjct 50192 ATTCAGAAGGAGTCCACCTTGCATCTTGTCCTCCGTCTTCGTGGCGG 50146 >seq245 Length=26962 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || || || ||| | || || || || || || | || Sbjct 23892 ATGCAGATCTTTGTTAAAACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCTTCG 23951 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || ||||| |||||||| || || ||||| Sbjct 23952 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 24011 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||| || | ||||| || ||| | || ||||||||| Sbjct 24012 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACCCTCTCGGATTACAAC 24071 Query 27168 ATTCAAAAGGAGTCGACC 27185 || || |||||||| ||| Sbjct 24072 ATCCAGAAGGAGTCCACC 24089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434868128869440