Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq278 159 3e-34 >seq278 Length=24804 Score = 159 bits (176), Expect = 3e-34 Identities = 431/662 (65%), Gaps = 32/662 (5%) Strand=Plus/Plus Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553 || ||||| | |||||| || | || ||||||| ||||| ||| |||| |||| | | Sbjct 16202 ATGTTGAGTTTGGGGAAGGGAAGTGGTTCTCGTTCGAGCTGAATCTTGAGCGGCTCTACG 16261 Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613 || | ||||| || || || |||| | | | || || ||| || | | | Sbjct 16262 TGATCTTTGTAGACGTGAGCGTCACCCATTGAAAGAACGAGTTCCTTTGGCTCGCAATCA 16321 Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCT 6673 ||| | |||||||||||| ||||||| |||||| |||||||||||||| || || || Sbjct 16322 GTGACTTTAGCGATCATGTAAGTGAGCAAAGCGTAGCTAGCAATGTTGAAGGGGACTCCC 16381 Query 6674 AACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCT--------------CCC 6719 || || | || | || ||||| || | ||| || || |||| ||| Sbjct 16382 AATCCAAGATCGCAGGAACGTTGGTACATCTGACACGAGAGCTGCTTCCTGCCTTGACCC 16441 Query 6720 ----CA------------TTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGC 6763 || || | |||| ||||||| |||| |||| || || || || Sbjct 16442 TTGGCATATGCGTCAAGGTTGGAGACGAAGAATTGACAGAACATGTGACAAGGTGGAAGA 16501 Query 6764 GCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGG 6823 ||||| || | |||||| || |||||||| |||| | || ||| || | || |||| Sbjct 16502 GCCATGAGGGAGAGATCTTTGGGGTTCCATGCGCTGAGCAAGATTCTGCGATCGGTAGGG 16561 Query 6824 TTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCC 6883 || ||| | ||||||| || | | || ||||| | ||||| || | ||||| Sbjct 16562 TTGTTCTTGATCTTGTCGATGACATCGCGGAGTTGGTCGACGCCCTGACCGGTGTAGTCG 16621 Query 6884 GCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCC 6943 | || | | | || || || ||||| || | ||| ||||| |||||||| || ||| Sbjct 16622 GTGTCACAATCTCTGTATTCGGCGCCAAAATGACGCCATTGGAAACCGTAGACTGGACCC 16681 Query 6944 AAGTCGCCCT-CCTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTG 7002 ||||| || | ||| | | | | | || || || ||| || || ||||| || |||| Sbjct 16682 AAGTCACCTTCCCTTCTGTGCT-GCAATCCTCGAGAGTCAAGGAACTCTCGTGAACCGTT 16740 Query 7003 AGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCAC 7062 | |||||||| | ||| || | | |||| ||||| || || || || Sbjct 16741 GCCATCCCAGATGTGCACACCTTTGTCTGTGAGCAACTTGGAGTCGGTCTTTCCAGCAAC 16800 Query 7063 GAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGG 7122 ||||| || |||||||||| || || || | ||||| || || |||||||| || Sbjct 16801 AAACCAGAGTAGCTCCTCGAGAACACCGCGAAAGAAGACACGCTTTGTTGTCAGCAGAGG 16860 Query 7123 AA 7124 || Sbjct 16861 AA 16862 Score = 159 bits (176), Expect = 3e-34 Identities = 431/662 (65%), Gaps = 32/662 (5%) Strand=Plus/Minus Query 34221 TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGT 34280 |||| |||||||| || || ||||| | || || || |||||||||| || |||| Sbjct 16862 TTCCTCTGCTGACAACAAAGCGTGTCTTCTTTCGCGGTGTTCTCGAGGAGCTACTCTGGT 16803 Query 34281 TCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACG 34340 | || || || || ||||| |||| | | || ||| | |||||||| | Sbjct 16802 TTGTTGCTGGAAAGACCGACTCCAAGTTGCTCACAGACAAAGGTGTGCACATCTGGGATG 16743 Query 34341 CTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGG-AGGGCGAC 34399 |||| || ||||| || || ||| || || || | | | | | ||| | || ||| Sbjct 16742 GCAACGGTTCACGAGAGTTCCTTGACTCTCGAGGATTGC-AGCACAGAAGGGAAGGTGAC 16684 Query 34400 TTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAA 34459 ||||| || |||||||| ||||| ||| | || ||||| || || || | | | || Sbjct 16683 TTGGGTCCAGTCTACGGTTTCCAATGGCGTCATTTTGGCGCCGAATACAGAGATTGTGAC 16624 Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGG 34519 | ||||| | || ||||| | ||||| || | | || ||||||| | ||| Sbjct 16623 ACCGACTACACCGGTCAGGGCGTCGACCAACTCCGCGATGTCATCGACAAGATCAAGAAC 16564 Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATG 34579 |||||| || | || ||| || | |||| |||||||| || |||||| | || ||| Sbjct 16563 AACCCTACCGATCGCAGAATCTTGCTCAGCGCATGGAACCCCAAAGATCTCTCCCTCATG 16504 Query 34580 GCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAA------------TG-- 34625 || || || || || |||| |||| ||||||| |||| | || || Sbjct 16503 GCTCTTCCACCTTGTCACATGTTCTGTCAATTCTTCGTCTCCAACCTTGACGCATATGCC 16444 Query 34626 --GGG--------------AGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGG 34669 ||| |||| || || ||| | || ||||| || | || | || Sbjct 16443 AAGGGTCAAGGCAGGAAGCAGCTCTCGTGTCAGATGTACCAACGTTCCTGCGATCTTGGA 16384 Query 34670 TTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 || || || || |||||||||||||| |||||| ||||||| |||||||||||| | ||| Sbjct 16383 TTGGGAGTCCCCTTCAACATTGCTAGCTACGCTTTGCTCACTTACATGATCGCTAAAGTC 16324 Query 34730 GTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAAC 34789 | | | || ||| || || | | | |||| || || || ||||| | Sbjct 16323 ACTGATTGCGAGCCAAAGGAACTCGTTCTTTCAATGGGTGACGCTCACGTCTACAAAGAT 16264 Query 34790 CACATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAA 34849 ||| | |||| |||| ||| ||||| ||||||| || | || |||||| | ||||| Sbjct 16263 CACGTAGAGCCGCTCAAGATTCAGCTCGAACGAGAACCACTTCCCTTCCCCAAACTCAAC 16204 Query 34850 AT 34851 || Sbjct 16203 AT 16202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448210586469840