Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq245 123 2e-23 seq430 111 1e-19 seq23 95.1 8e-15 >seq245 Length=26962 Score = 123 bits (136), Expect = 2e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 23604 ACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGA 23663 ||| || |||||||| || ||||||||||||||||| || || ||||| ||||| || || Sbjct 23885 ACTCAAGATGCAGATCTTTGTTAAAACCCTCACGGGTAAGACCATCACCCTCGAGGTCGA 23944 Query 23664 CTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGC 23722 || ||||||| | || ||| | || | || | | ||||| ||||| | || | Sbjct 23945 GTCTTCGGACACCATCGACAATGTCAAGGCCAAGA-TCCAGGACAAGGAAGGCATTCCCC 24003 Query 23723 CAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCG 23782 | ||||| |||||| | || ||||||||||| || || ||||| | ||||| | | Sbjct 24004 CTGATCAGCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACCCTCTCGG 24063 Query 23783 ATTACAACATACAAAAAGAGTCCAC 23807 |||||||||| || || |||||||| Sbjct 24064 ATTACAACATCCAGAAGGAGTCCAC 24088 >seq430 Length=15258 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || || || || || ||||||||||| || ||| || Sbjct 1211 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 1270 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || ||| |||| | || | | || || ||||| | || || || || Sbjct 1271 GACACTATCGACAATGTTAAGGCCAAGA-TCCAGGATAAGGAAGGCATTCCCCCTGACCA 1329 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| || || || || ||||||| || || | |||||||| Sbjct 1330 GCAGCGTCTTATCTTTGCTGGAAAGCAGCTCGAAGACGGCCGAACCCTCTCGGATTACAA 1389 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| || ||||| || ||| | ||| | | |||||||| || Sbjct 1390 CATCCAAAAGGAATCCACGTTGCATCTCGTTCTGCGATTGCGAGGTGG 1437 >seq23 Length=89368 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || ||||| ||||| || || ||| || Sbjct 50600 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCG 50541 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| ||||| | || || ||||| Sbjct 50540 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCTGATCAG 50481 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || || || || || || || | |||||| | || |||||| Sbjct 50480 CAGCGACTCATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACTCTCTCGGACTACAAC 50421 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 50420 ATCCAGAAAGAGTCCAC 50404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337971507057476