Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq278 140 2e-28 >seq278 Length=24804 Score = 140 bits (154), Expect = 2e-28 Identities = 397/613 (65%), Gaps = 34/613 (6%) Strand=Plus/Plus Query 27100 AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCC 27159 ||| |||| ||||| || || | ||||||||| |||| ||||| || |||||||| Sbjct 16208 AGTTTGGGGAAGGGAAGTGGTTCTCGTTCGAGCTGAATCTTGAGCGGCTCTACGTGATCT 16267 Query 27160 AGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACG 27219 ||||||||||||||| |||| | | || | || || || | ||||| Sbjct 16268 TTGTAGACGTGAGCGTCACCCATTGAAAGAACGAGTTCCTTTGGCTCGCAATCAGTGACT 16327 Query 27220 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 27279 | ||| |||||||| ||||| | || |||||| || ||||| ||||| || || | || Sbjct 16328 TTAGCGATCATGTAAGTGAGCAAAGCGTAGCTAGCAATGTTGAAGGGGACTCCCAATCCA 16387 Query 27280 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT---------CT----CCATCGCT 27326 | || | || | ||||| | |||||||||||||| || || | || Sbjct 16388 AGATCGCAGGAACGTTGGTACATCTGACACGAGAGCTGCTTCCTGCCTTGACCCTTGGCA 16447 Query 27327 TA-----------------CGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATG 27369 || || | || ||||| | ||| || || |||||||||||| Sbjct 16448 TATGCGTCAAGGTTGGAGACGAAGAATTGACAGAACATGTGACAAGGTGGAAGAGCCATG 16507 Query 27370 AGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTC 27429 ||| | |||||||||||||| |||| | | ||| | | || ||||||||| Sbjct 16508 AGGGAGAGATCTTTGGGGTTCCATGCGCTGAGCAAGATTCTGCGATCGGTAGGGTTGTTC 16567 Query 27430 CTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC--TACCC 27487 |||| ||| | | | | | || || || || ||| || | |||||| | | Sbjct 16568 TTGATCTTGTCGATGACATCGCGGAGTTGGTCGACGCCCTGACCGGTGTAGTCGGTGTCA 16627 Query 27488 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGT 27547 || || |||| || || || ||||| | ||||||||| ||||| || || |||| || Sbjct 16628 CAATCTC--TGTATTCGGCGCCAAAATGACGCCATTGGAAACCGTAGACTGGACCCAAGT 16685 Query 27548 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 | || || ||||||| || || | ||| | || |||| ||||||||| | | Sbjct 16686 CACCTTCCCTTCTGTGCTGCAATCCTCGAGAGTCAAGGAACTCTCGTGAACCGTTGCCAT 16745 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 27667 ||||||| | || || || || | |||| ||||||| || || || |||| Sbjct 16746 CCCAGATGTGCACACCTTTGTCTGTGAGCAACTTGGAGTCGGTCTTTCCAGCAACAAACC 16805 Query 27668 ACAGCAGCTCCTC 27680 | || |||||||| Sbjct 16806 AGAGTAGCTCCTC 16818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369465557346857