Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq544 132 7e-26 >seq544 Length=9533 Score = 132 bits (146), Expect = 7e-26 Identities = 343/519 (66%), Gaps = 14/519 (3%) Strand=Plus/Plus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || |||||||||||||| || ||||| || |||||||| || || | ||| Sbjct 3494 TCGTTGGAGAAGGTGAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCG 3553 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 ||||| || || ||||| || || |||||||||||||| || || | |||| | | Sbjct 3554 AAAGAACCGGAGAAGAAGATACCCTCTACGGCCGCAAAGGCAACGAGACGCTCTGCAAAG 3613 Query 48303 CTGGC--TTC-GTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 |||| ||| || | ||||| || | ||||| |||||||||| ||| || || Sbjct 3614 GTGGCCTTTCGGTCGCTAATCCAGCGGAGGGCCCAGTCAGCCTTCTGCTTGACGACCGGG 3673 Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCT----ATCTTTAACGTAAGT 48415 || ||||| | || | |||||| || || | |||| || | |||||| Sbjct 3674 ATGGTTTCGACGGCGTCAAAGAGGAA----TTCGCGCTGCTCGGGCTCACGGATGTAAGT 3729 Query 48416 ATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTA 48475 || || | ||| ||| | |||||||| || || || || ||||| || ||||| Sbjct 3730 GTCGATGAGAAGCGAATAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTA 3789 Query 48476 AAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATT 48535 || |||| || || | ||| ||||| | || || || || | | ||||| || Sbjct 3790 GAAGCATCGAGCCTCGGCAGCCTGAACCTCGGAACTGAAACGCTCGACGAGGTTCTCGTT 3849 Query 48536 TACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTT 48595 || || ||||| |||||| || || || | || || || || | ||||| Sbjct 3850 GACGATACCATCGGAAGCAGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGACGCTCGTT 3909 Query 48596 GGAAGTCAGTTTATT---CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGT 48652 | | || || || |||||||| | || || || | || | || || || || Sbjct 3910 GTCGTTGAGCTTGTTGTCCCAGTCATGAAGGTCCTTGGAGAGGTCGATCTCCTCGGCGGT 3969 Query 48653 CCAAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 ||| || || ||||| || || || ||||| | ||| || Sbjct 3970 CCAGAAGGAAGCCTCGGCCTTCTTGTACATTTGCCAGAT 4008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694588504970080