Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq97 141 1e-28 >seq97 Length=49960 Score = 141 bits (156), Expect = 1e-28 Identities = 624/979 (64%), Gaps = 14/979 (1%) Strand=Plus/Minus Query 76270 AAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATT---AGCATTGGCATATTGTAT 76326 |||||| || || || || || ||||| || ||||||| |||| || || | || Sbjct 18769 AAGAGCGATGGAGGCAAGGTTGCAAACAGCAACCTCATCGGGAGCACTG---TACTCGAT 18713 Query 76327 TATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTT 76386 ||||| ||||| | || ||||||||||| || || || | |||||| ||| Sbjct 18712 GATCTCAGTGCACAAGTTGGAGCACTTGATAGTACCGAGGTTCTTCTGGTTGGACTTGCG 18653 Query 76387 GTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAAT 76446 ||| | |||||| || || | || || | ||||| || |||| || |||| || Sbjct 18652 GTTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCAGTCTCGGTCTGCGACTCGAGGAT 18593 Query 76447 AGATTTCCAGACGACTCT-AGCTTTTATTATAGATTTGTATCG--CTTCTCTCTTTCATA 76503 | | ||||| | ||| ||| || | | ||| | || |||| || | || Sbjct 18592 GGCGTACCAGA-GCTTCTGAGCCTTGACGGTGCGCTTGGAACGACCTTCAGCCT--CGTA 18536 Query 76504 TTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATT 76563 | || | || ||||| || || || | ||| | | ||| || || || || Sbjct 18535 ACGCTCGTAGAGACGCTCAAACTCCTCACCGTAGCAGTCAGCGAGACCGGGGCACTCGTT 18476 Query 76564 CGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTAT 76623 || ||||| | ||||| || || | | || ||||| ||||| |||||||| || | Sbjct 18475 GGGGCACATGAGCGACCATTCGCCGTTCTGCTCAACCCTCTTCATGAAGAGATCGGGAAC 18416 Query 76624 CCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAG 76683 ||| ||||| || || || |||| | | |||||| || || ||||| | Sbjct 18415 CCAGAGAGCGTAGAAGAGTTCACGGGCACGAACTTCTTCCTTACCGTGGTTCTTGCGCAA 18356 Query 76684 ATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGG 76743 || |||||||| | | ||| || ||||| || || | || || || | |||| || Sbjct 18355 GTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCGGG 18296 Query 76744 TCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGG 76803 || || ||||| ||||| || | || | ||| ||||| || | || | | ||| || Sbjct 18295 ACGCTTGTTACCACCCTGGTCGACGTAACGGGCGGTGTTGTTGAAGACACGAAGCATGGG 18236 Query 76804 AATAATGCCGTTAGATGT-ACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATAT 76862 || || ||||| | || ||| || || || | ||| || ||| | ||||| Sbjct 18235 AACGATACCGTT-GCTGACACCGTTGGTGCCGGCAATGTACGAGCCAGTACCTCGAATGC 18177 Query 76863 TACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATG 76922 ||| | || || || || || | || ||||| | |||||| || | | Sbjct 18176 AGTGAATGTTCAAACCAATGCCGCCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGG 18117 Query 76923 TGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTT 76982 |||| || ||||| || || |||||| ||||| || ||| |||||| || | | Sbjct 18116 TGTCGTAAATGCCATCGATCGAGTCATCCTTCATGGCAACAAGGAAACAGGACGAGAGCT 18057 Query 76983 GATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAG 77042 || |||| ||| || || || || | || || || || ||||| || | |||| | Sbjct 18056 GAGGATGGGGAGTGCCAGCGTTGAAGAGGGTTGGCGAGGCGTGAGTAAAGTACTTTTGCG 17997 Query 77043 AAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGA 77102 | | || ||||| || || ||| | || || ||| ||||| || ||||||| Sbjct 17996 ACATGAGGTTGTAAGTCTCGATAGCACTCTCGATGTCCTGGCCGTGAATACCAACAGCGA 17937 Query 77103 CACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATG 77162 ||||||| | ||| ||||| || || || || ||| || || | |||||| | Sbjct 17936 CACGCATGAGCATGTGCTGGGGACGCTCAGCAACCTTGCCGTTGATGCGGAGCAAGTAGG 17877 Query 77163 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAA 77222 | || | ||| || || || ||| ||||||| ||||| | ||||| || ||| Sbjct 17876 AACGCTCGAGAGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATAG 17817 Query 77223 CCGAATTTAGTTTGTCCTT 77241 |||| | || | |||||| Sbjct 17816 CCGAGTCAAGCTGGTCCTT 17798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712851993695040