Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq23 116 9e-21 seq245 114 3e-20 seq430 105 2e-17 seq29 86.0 1e-11 >seq23 Length=89368 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| ||||| || ||||| |||||||| ||||||||||| || | | ||| | Sbjct 50382 GAGGCGGAGAACAAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGAGTGCG 50441 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || |||||||| || | |||||| || | | ||| ||||| Sbjct 50442 GCCATCCTCGAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGATCAGGTGGGATGCCTTC 50501 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| | || | | |||| || ||| || || || || Sbjct 50502 CTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGT 50561 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| ||||| ||||| || |||| |||||| Sbjct 50562 GATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 50600 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||||||||| | || ||||| || || |||||||| |||| | || | ||||| Sbjct 50160 GAGGACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATC 50219 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || || || |||||||| | ||||||||| | | || || ||||| || Sbjct 50220 TTCAAGCTGCTTGCCTGCAAAGATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTATC 50279 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || || || | || | | |||| || || || |||||||| ||||| Sbjct 50280 CTGAATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGGATTCGACCTCAAGAGTGATAGT 50339 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | |||||| ||||||| ||||| Sbjct 50340 CTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 50372 >seq245 Length=26962 Score = 114 bits (126), Expect = 3e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || ||||| || ||||| || |||||||||||||| | | || | ||||| Sbjct 24104 GAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGACCATC 24045 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || ||||| ||||| || | |||||| || | | || |||||||| || Sbjct 24044 TTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTC 23985 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || |||||| | || | | |||| ||| ||| || || || || || || Sbjct 23984 CTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGT 23925 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || |||||||| || || || |||| |||||| || Sbjct 23924 CTTACCCGTGAGGGTTTTAACAAAGATCTGCATCTT 23889 >seq430 Length=15258 Score = 105 bits (116), Expect = 2e-17 Identities = 157/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || || || || || ||||| || ||||||||||| || | | |||| Sbjct 1201 GAGACGGAGAACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCG 1142 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| || || ||||| |||||||| || || | |||||| || | | || || Sbjct 1141 TCCATCCTCAAGCTGCTTT--CCGGCGAAAATGAGACGCTGCTGATCGGGAGGAATACCC 1084 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || ||||| || ||||| | || | | |||| ||| ||| || || || Sbjct 1083 TCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGG 1024 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || |||||||| ||||||| |||||| Sbjct 1023 GTGATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCAT 983 Score = 105 bits (116), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| | || || || ||||||||||||||||| | | |||| || ||| Sbjct 1422 AGAACGAGATGCAACGTGGATTCCTTTTGGATGTTGTAATCCGAGAGGGTTCGGCCGTCT 1363 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || || |||||||| | ||||||||| | | || |||||||| | Sbjct 1362 TCGAGCTGCTTT--CCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATGCCTTCCTTAT 1305 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || || ||| | || | |||| || ||| ||||| |||||||| | Sbjct 1304 CCTGGATCTTGGCCTTAACATTGTCGATAGTGTCCGAGGACTCGACTTCGAGAGTAATGG 1245 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| || | ||||| || |||| |||||| Sbjct 1244 TCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 1211 >seq29 Length=80376 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| || || || |||||||| || ||||||||||| || | | || | Sbjct 49845 GAGACGGAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCG 49904 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || ||||||||||| || | ||||||||| | | ||| || || Sbjct 49905 GCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTC 49964 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| | || | | |||| ||| ||| || ||||| || Sbjct 49965 CTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGT 50024 Query 152066 AATAGTTTTGCCCGT 152080 || || || || || Sbjct 50025 GATGGTCTTACCTGT 50039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153684098556737