Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq430 181 2e-40 seq23 178 3e-39 seq245 174 3e-38 seq29 143 6e-29 seq3063 89.7 1e-12 >seq430 Length=15258 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| |||| || || || ||||| |||||| ||| |||||||||||||| || | Sbjct 1438 ACCACCTCGCAATCGCAGAACGAGATGCAACGTGGATTCCTTTTGGATGTTGTAATCCGA 1379 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| || || || || || || |||||||| | ||| || |||||| || Sbjct 1378 GAGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGGGG 1319 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||| || |||||||| || || || | |||||||||||||| | ||||| Sbjct 1318 AATGCCTTCCTTATCCTGGATCTTGGCCTTAACATTGTCGATAGTGTCCGAGGACTCGAC 1259 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||| || ||||| || ||||| ||||| || || |||||||| Sbjct 1258 TTCGAGAGTAATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 1211 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || ||||| || | || || || |||||||||||||| | Sbjct 1210 ACCACCACGGAGACGGAGAACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 1151 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || |||||||| || || || ||||| || || | ||| || || || || Sbjct 1150 AAGGGTTCGTCCATCCTCAAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCGGGAGG 1091 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| || ||||| || || ||| | ||||| ||||| |||| || || Sbjct 1090 AATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 1031 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| |||||||| |||| |||||| ||||| |||||||| Sbjct 1030 CTCGAGGGTGATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCAT 983 >seq23 Length=89368 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || || ||||| || ||| || || || ||||||||||| | Sbjct 50145 ACCGCCACGAAGACGGAGGACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGA 50204 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || |||||||| || || || || || |||||||| | || || |||||| || Sbjct 50205 AAGGGTACGGCCATCTTCAAGCTGCTTGCCTGCAAAGATAAGGCGCTGCTGGTCAGGGGG 50264 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||| || || ||||| || || ||| | ||||| ||||| || | |||||| Sbjct 50265 AATACCCTCCTTATCCTGAATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGGATTCGAC 50324 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||| || ||||||||||| ||||| || ||||| Sbjct 50325 CTCAAGAGTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 50372 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | ||| ||||| |||||||||||||| | Sbjct 50373 ACCACCACGGAGGCGGAGAACAAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGA 50432 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || || ||||| | || || || ||| || Sbjct 50433 GAGAGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGATCAGGTGG 50492 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| |||||||| || || ||| | || || |||||||| | ||||| Sbjct 50493 GATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCGAC 50552 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| || || |||||||| Sbjct 50553 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 50600 >seq245 Length=26962 Score = 174 bits (192), Expect = 3e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | ||| || || ||||||||||| || | Sbjct 24119 ACCACCACGAAGGCGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGA 24060 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| ||||| || || || || ||||||||||| | ||| || || ||| || Sbjct 24059 GAGGGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGGGG 24000 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || |||||||| |||||||| || || || | ||||| |||||||||| ||||| Sbjct 23999 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCGAC 23940 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| ||||| ||||||||||| | || ||||| || |||||||| || Sbjct 23939 CTCGAGGGTGATGGTCTTACCCGTGAGGGTTTTAACAAAGATCTGCATCTT 23889 >seq29 Length=80376 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || || || | || || || |||||||||||||| | Sbjct 49836 ACCACCACGGAGACGGAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGA 49895 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || ||||| ||||| | ||| || ||||| || Sbjct 49896 GAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCGGGGGG 49955 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| || || ||| | ||||| ||||| |||| || || Sbjct 49956 GATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 50015 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 || || ||||| |||||||| || Sbjct 50016 CTCAAGGGTGATGGTCTTACCTGT 50039 >seq3063 Length=327 Score = 89.7 bits (98), Expect = 1e-12 Identities = 116/154 (75%), Gaps = 6/154 (4%) Strand=Plus/Minus Query 109934 AGATTGCAACATCATCAAATTGCGGGAACCCCCTAAAGCATATGATACCAAGGTTGATTG 109993 ||||||| ||| ||||||||||||| || ||||||||| | |||||||| || Sbjct 212 AGATTGCGACACTATCAAATTGCGGGGACACCCTAAAGCTTTCAATACCAAGCCGACATG 153 Query 109994 TGAAAGCATCAGC--TGGCCGAGAACAGAACTC-GGGTATGGTAAAAATTCATATGATGC 110050 |||| ||| | |||||||| | || | |||||||||||||| | | |||| Sbjct 152 -GAAA-CATAGTCGGTGGCCGAGTTAATGACCCTGGGTATGGTAAAAACTTGAAAGATGT 95 Query 110051 CACAATGGGCAATCCGCAGCCAAGCCTCTAAAGG 110084 ||||||||||||||||||||||| |||||| || Sbjct 94 TACAATGGGCAATCCGCAGCCAAG-CTCTAAGGG 62 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046615185283538