Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq245 141 7e-29 seq430 123 2e-23 seq23 120 2e-22 seq29 100 2e-16 >seq245 Length=26962 Score = 141 bits (156), Expect = 7e-29 Identities = 159/211 (75%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| ||| |||||| |||||||||||||| | ||| ||| | || || Sbjct 24100 ACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGACCATCTTCG 24041 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||| | |||||||||||| | || | |||||||| ||| Sbjct 24040 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGG 23981 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | |||||||| | || || ||||| | || || |||| Sbjct 23980 ATCTTGGCCTTGACATTGT--CGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCT 23923 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||||||| || || ||||| ||||| Sbjct 23922 TACCCGTGAGGGTTTTAACAAAGATCTGCAT 23892 >seq430 Length=15258 Score = 123 bits (136), Expect = 2e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || || |||||| ||||||||||| || | || || | || || Sbjct 1191 ACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGTCCATCCTCA 1132 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| || || | |||||||||||| | ||| | ||| ||||| ||| Sbjct 1131 AGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGA 1072 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||||| || |||||||| | || || ||||| Sbjct 1071 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTA 1012 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGA 44339 || || || ||||| |||||||| ||||||| Sbjct 1011 CCGGTCAGAGTCTTTACGAAGATCTGCATGA 981 Score = 122 bits (134), Expect = 6e-23 Identities = 168/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| || || || || || || | |||| |||||||||||||||||||| Sbjct 1441 CATACCACCTCGCAATCGCAGAACGAGATGCAACGTGGATTCCTTTTGGATGTTGTAATC 1382 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| || |||| || |||||||| || |||||||| | ||||||||| || | Sbjct 1381 CGAGAGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGG 1322 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284 || | |||||||| ||| ||||| ||| || ||| | || ||||| | ||| Sbjct 1321 GGGAATGCCTTCCTTATCCTGGATCTTGGCCTTAACATTGT--CGATAGTGTCCGAGGAC 1264 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | ||||| ||||| || || | |||||| || ||||| ||||| Sbjct 1263 TCGACTTCGAGAGTAATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 1211 >seq23 Length=89368 Score = 120 bits (132), Expect = 2e-22 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| ||| || ||||||||||| || | ||| ||| | || || Sbjct 50392 ACAAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCCTCG 50451 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||| | ||||||||||| | || | |||||||| ||| Sbjct 50452 AGCTGCTTACCAGCGAAGATGAGTCGCTGCTGATCAGGTGGGATGCCTTCCTTGTCCTGG 50511 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| | ||| || ||||| | || || ||||| Sbjct 50512 ATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTG 50571 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCA--TGATGTGA 44344 || ||||||||||| || ||||| |||| |||||||| Sbjct 50572 CCGGTGAGGGTCTTGACAAAGATCTGCATCTGATGTGA 50609 Score = 107 bits (118), Expect = 1e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| || |||||||| |||| || || | || || |||||||| || ||||| Sbjct 50181 CTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTCAAGCTGCTTGCCTGCAAA 50240 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||| | |||||||| || | || | ||| ||||| ||| ||||| ||| || || Sbjct 50241 GATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTATCCTGAATCTTGGCCTT-AACGT 50299 Query 44266 TC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 | | |||||||| | |||||| ||||| | || || ||||| || || | ||||| | Sbjct 50300 TGTCGATGGTGTCAGAGGATTCGACCTCAAGAGTGATAGTCTTGCCGGTCAAAGTCTTGA 50359 Query 44325 CGAAGATTTGCAT 44337 ||||||||||||| Sbjct 50360 CGAAGATTTGCAT 50372 >seq29 Length=80376 Score = 100 bits (110), Expect = 2e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||||||||| || | ||| ||| |||| || Sbjct 49855 ACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCG 49914 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||| | ||||||||| || | || | ||| ||||| ||| Sbjct 49915 AGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGG 49974 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||||| || |||||||| | || || ||||| Sbjct 49975 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTA 50034 Query 44309 CCCGT 44313 || || Sbjct 50035 CCTGT 50039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359949829869399