Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq430 140 3e-28 seq23 134 1e-26 seq245 120 3e-22 seq29 118 1e-21 >seq430 Length=15258 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || ||||||||| ||||| ||||| || Sbjct 1209 CCACCACGGAGACGGAGAACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 1150 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || |||||||| |||||||| || || ||||| || || | ||| Sbjct 1149 AGGGTTCGTCCATCCTCAAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCGGGAGGA 1090 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| | || || | ||| | | | |||||| |||||||| Sbjct 1089 ATACCCTCCTTGTCC-TGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 1031 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || || ||||| ||||| ||||||||||| ||||||||| Sbjct 1030 CTCGAGGGTGATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCATG 982 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||||| |||| ||||| || ||||| || || |||||||| || |||| ||| Sbjct 1419 ACGAGATGCAACGTGGATTCCTTTTGGATGTTGTAATCCGAGAGGGTTCGGCCGTCTTCG 1360 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| || || || || || ||||| ||||| | ||||| || ||||| ||| || Sbjct 1359 AGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATGCCTTCCTTATCC-TG 1301 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | || || | ||| | | | |||||| ||||| || || | || || || || Sbjct 1300 GATCTTGGCCTTAACATTGTCGATAGTGTCCGAGGACTCGACTTCGAGAGTAATGGTCTT 1241 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| ||||| || || |||||||| Sbjct 1240 GCCGGTCAAGGTCTTGACAAAGATCTGCAT 1211 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| || || || || || || |||||||||||||| || || || || Sbjct 1665 CCGCCACGAAGACGCAAAACAAGGTGAAGAGTACTCTCCTTCTGAATATTGTAATCAGAC 1606 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || | ||| || || || || |||| ||||| ||||| | ||| Sbjct 1605 AGAGTTCGTCCATCCTCCAACTGTTTACCAGCAAAAATCAATCGCTGCTGGTCAGGAGGA 1546 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| | || || | || | | | ||||| || || || Sbjct 1545 ATACCTTCCTTGTCC-TGAATCTTGGCCTTGACATTGTCAATCGTGTCCGAAGATTCGAC 1487 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || || |||||||| || || |||||||| Sbjct 1486 TTCCAAAGTGATGGTCTTTCCTGTGAGCGTCTTGACAAAGATCTGCAT 1439 >seq23 Length=89368 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || ||||||| ||| ||||||||||||||| |||||||| Sbjct 50146 CCGCCACGAAGACGGAGGACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGAA 50205 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || ||||||||||| || || || |||||||| ||||| | |||| Sbjct 50206 AGGGTACGGCCATCTTCAAGCTGCTTGCCTGCAAAGATAAGGCGCTGCTGGTCAGGGGGA 50265 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| | || || | |||| | | | ||||| || || || Sbjct 50266 ATACCCTCCTTATCC-TGAATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGGATTCGAC 50324 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || |||| ||||| ||||| || ||||| Sbjct 50325 CTCAAGAGTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 50372 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || || || ||| ||| ||||| ||||| ||||| ||| Sbjct 50374 CCACCACGGAGGCGGAGAACAAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAG 50433 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || ||||||||||| || ||||| || || ||||| || || | || Sbjct 50434 AGAGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGATCAGGTGGG 50493 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| || | || || | ||| | | | ||||| ||||| || Sbjct 50494 ATGCCTTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCGAC 50552 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || || || ||||| || || |||||||| Sbjct 50553 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 50600 >seq245 Length=26962 Score = 120 bits (132), Expect = 3e-22 Identities = 167/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || || || ||| ||||||||| ||||| || || ||| Sbjct 24118 CCACCACGAAGGCGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAG 24059 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || ||||||||||||||||| || || || ||||| || || | |||| Sbjct 24058 AGGGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGGGGA 23999 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || ||||||||| ||| || ||| || | || | ||||| ||||| | Sbjct 23998 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG--ATGGTGTCCGAAGACTCGA 23941 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| | || || || |||||||| || || || || || |||||||| || Sbjct 23940 CCTCGAGGGTGATGGTCTTACCCGTGAGGGTTTTAACAAAGATCTGCATCTT 23889 >seq29 Length=80376 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || ||||||||| ||||| ||||| ||| Sbjct 49837 CCACCACGGAGACGGAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAG 49896 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| ||||||||||| |||||||| || || ||||| ||||| | ||| Sbjct 49897 AGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCGGGGGGG 49956 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| || | || || | ||| | | | |||||| |||||||| Sbjct 49957 ATACCCTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 50015 Query 41815 CTCCACCGTTATCGTTTTACCCGT 41838 ||| | || || || ||||| || Sbjct 50016 CTCAAGGGTGATGGTCTTACCTGT 50039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462250563436400