Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq236 111 2e-19 >seq236 Length=132806 Score = 111 bits (122), Expect = 2e-19 Identities = 172/245 (70%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || ||| ||| ||||||||||| | || | ||||||||| || ||||| Sbjct 3624 CAAGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGTTCGTTGGAGAAGGTGAGA 3683 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 |||||||| || |||||||| || ||||| || ||||| || || || ||||| ||||| Sbjct 3684 CCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCAGAGAAGAAG 3743 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGT 24311 || || || || || |||||||||| || | || | | | || | ||| Sbjct 3744 ATGCCCTCAACGGCGGCAAAGGCAACGAGACGCTCGGCGAAGGTAGCGCGTCGGTCGCTG 3803 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371 ||||| ||||||| |||||||||| || || || |||||||| | ||| | | Sbjct 3804 ATCCAGCGAAGAGCCCAGTCGGCCTTCTCCTTGACGACGGGGATTGTCTCGACAGCGTCA 3863 Query 24372 AAGAG 24376 ||||| Sbjct 3864 AAGAG 3868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593719388387040