Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq247 118 1e-21 >seq247 Length=126104 Score = 118 bits (130), Expect = 1e-21 Identities = 269/399 (67%), Gaps = 8/399 (2%) Strand=Plus/Minus Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGG 145929 ||| |||| || || | | |||||| || || ||||||||| || || || || Sbjct 87306 ACGAAGAATTGACAAAACATGTGGCAAGGGGGGAGGGCCATGAGGGAGAGATCTTTGGGA 87247 Query 145930 TTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGG---GGTTCCTCTTGATCTCCCCTATC 145986 ||||| || |||||| || || | | |||| |||| | ||||||| | ||| Sbjct 87246 TTCCATGCAATGAGGAGGAT--TCGT-CGATCGGTAGGGTTGTTTTTGATCTTGTCGATC 87190 Query 145987 AGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCG 146046 | || | || ||||| ||||| || ||||| || | | |||| | ||| || Sbjct 87189 ACATCGCGCAGTTGGTCGACGCCTTGGTTGGTGTAATTCGTGTCGCAGTCGATGTAATCG 87130 Query 146047 GCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTC-CCTGTG 146105 || || ||||| | ||| ||||| ||||||||||| || ||||| || | ||| ||||| Sbjct 87129 GCGCCAAAGTGACGCCATTGGAAGCCGTAGACGGGACCGAGGTCTCC-GACTCGTCTGTG 87071 Query 146106 CCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC 146165 || | | | |||| ||||| || || |||||| |||||||||| | ||||| Sbjct 87070 TTGGAGATTGCGCGAGTCGAGAAAGTCACGCGATCCGTTGCCGTCCCAGATATGAACGCC 87011 Query 146166 CCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAG 146225 | | | ||| ||| ||| || || | |||||||||||| |||||||| Sbjct 87010 ATTGTCAGTGAGGAGCTTGCTGTCGGTTTTGCCGGCTACGAACCAGAGCAGTTCTTCGAG 86951 Query 146226 GACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGG 146264 ||| || | ||||||| | |||||||| |||| ||| Sbjct 86950 GACGCCTCGGAAGAAGACTCGTTTGGTGGTGAGCAAGGG 86912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590074601963920