Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1 113 4e-20 seq226 107 2e-18 seq247 82.4 6e-11 >seq1 Length=1882320 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | || | |||||| ||||| |||||||| ||||| | Sbjct 161271 CCGCCACGAAGACGGAGAACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGAA 161330 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || |||| |||||||| ||||| ||| | || |||| ||||||||| ||| Sbjct 161331 AGGGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGG 161390 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||| || || | | | | || || | ||| | Sbjct 161391 ATTCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCCGAAGACTCGACT 161450 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | |||||||||||| || || || || |||||||| |||||||| Sbjct 161451 TCGAGGGTAATGGTCTTACCTGTCAAGGTCTTGACAAAGATTTGCAT 161497 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||| | || | ||||||||||| || ||||| ||||||| Sbjct 79439 CCACCACGCAGACGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 79380 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | ||||||| ||||| || || || | ||||||| ||||||||| ||| Sbjct 79379 AGGGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGGG 79320 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || | | ||| || || | |||| Sbjct 79319 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACC 79260 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 || | ||| |||||||| || || | || || ||||| || ||||| |||| Sbjct 79259 TCAAGGGTGATGGTCTTACCCGTAAGGGTCTTCACAAAGATCTGCATGTTGA 79208 >seq226 Length=271753 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||||| ||||||||||| |||||||||||||||| || || || | ||| Sbjct 170373 AGCACAAGGTGCAAGGTGGACTCCTTCTGAATGTTATAGTCCGAGAGCGTGCGGCCATCC 170314 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| || || ||| | || || | |||||||| ||| | ||||||||||| Sbjct 170313 TCGAGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTTGTCC 170254 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| || || | | | | || || | ||| |||| || |||||| Sbjct 170253 TGAATCTTGGCCTTGACGTTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGTGATGGTC 170194 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || || |||||||| |||||||| Sbjct 170193 TTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 170162 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 ||| || || || || | |||||| | ||||| ||| |||||| |||||||| ||||| Sbjct 171304 GTTACCGCCACGGAGACGGAGCACAAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTC 171245 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 || || || || | ||||| ||||| || || ||| | || || | |||||||| Sbjct 171244 CGAGAGCGTGCGGCCATCCTCGAGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGG 171185 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 ||| | ||||||||||| ||||| || || | | | | || || | ||| Sbjct 171184 GGGAATACCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATGGTGTCTGAAGACTC 171125 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||||||||| || || || |||||||| || ||||| Sbjct 171124 GACCTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 171074 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| || |||| |||||| || | || |||| ||| || || Sbjct 170130 GTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTTCGGCCATCTTCCAACTGCTTACCA 170071 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | ||||| | ||||||||| ||| | || |||||||| |||||| || Sbjct 170070 GCAAAGATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTG 170011 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | | || || | |||| || | ||| |||||||| ||||| | || Sbjct 170010 ACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCGGTCAGAGTC 169951 Query 21159 TTGACAAATATTTGCAT 21175 |||||||| || ||||| Sbjct 169950 TTGACAAAGATCTGCAT 169934 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||||| ||||||||||| |||||||||||||||| || || || | ||| Sbjct 170829 AGCACAAGGTGCAAGGTGGACTCCTTCTGAATGTTATAGTCCGAGAGCGTGCGGCCATCC 170770 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| || || ||| | || || | |||||||| ||| | ||||||||||| Sbjct 170769 TCGAGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTTGTCC 170710 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| || || | | | | || || | ||| || | || || ||| Sbjct 170709 TGAATCTTGGCCTTGACGTTGTCAATGGTGTCTGAAGACTCGACCTCGAGCGTGATTGTC 170650 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | ||| |||||||| || ||||| Sbjct 170649 TTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 170618 >seq247 Length=126104 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || ||||| | ||| || | || | || |||||||| || ||||| ||||||| Sbjct 71196 TTCCACCACGCAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCG 71137 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||||| || ||||||| ||||| || || || | || || | ||||||||| || Sbjct 71136 AGAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGG 71077 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || ||||| || ||||| || || | | ||| || || || |||| Sbjct 71076 GAATACCCTCCTTATCCTGAATCTTGGCCTTAACATTGTCGATGGTGTCCGAGGACTCCA 71017 Query 21127 TTTCCACGGTAATGGTCTTGCCGGT 21151 || | |||||||||||| || || Sbjct 71016 CCTCAAGGGTAATGGTCTTACCTGT 70992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422257666407368