Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq236 376 3e-99 seq1 141 1e-28 seq226 131 2e-25 seq247 102 8e-17 >seq236 Length=132806 Score = 376 bits (416), Expect = 3e-99 Identities = 433/575 (75%), Gaps = 17/575 (3%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||||| ||||||| | |||||| Sbjct 4180 ATCTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACCGCCGAGGAGATTGACCTG 4121 Query 116696 TCCAAGGA----CACGA--GCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATC 116749 |||||||| ||||| | ||| ||| |||| |||||||||| || |||||| Sbjct 4120 TCCAAGGATCTTCACGATTGGGACAACAAGC---TGAATCACAACGAGCGTCACTTCATC 4064 Query 116750 AAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAG 116809 ||||| || ||||| |||||||| |||||| |||||||||||||| || |||||| Sbjct 4063 TCCCACGTCCTCGCCTTCTTCGCCGCTTCCGACGGTATCGTCAACGAGAACCTTGTCGAG 4004 Query 116810 CGTTTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGC 116868 |||||| |||| | ||||||||| |||||||| || |||||||| || || |||||| Sbjct 4003 CGTTTCAGCTCCG-AGGTGCAGGCCGCCGAGGCTCGATGCTTCTATGGTTTCCAGATCAT 3945 Query 116869 CATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTC 116928 ||||||||| | ||| || | || ||| ||||||||||| ||| | ||| | Sbjct 3944 GATGGAGAACATCCACAGCGAGACCTACTCGCTGCTCATCGACACCTACATCCGCGAGCC 3885 Query 116929 GGAGGAGA---AGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAA 116985 ||| || || ||| || ||| ||| ||||||| || || |||||| ||||| Sbjct 3884 CGAGCAGCGCGAGTTCCTCTT--TGA-CGCTGTCGAGACAATCCCCGTCGTCAAGGAGAA 3828 Query 116986 GGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGT 117045 |||||| ||||| || ||||||||| || | || || |||||| |||||| || || Sbjct 3827 GGCCGACTGGGCTCTTCGCTGGATCAGCGACCGACGCGCTACCTTCGCCGAGCGTCTCGT 3768 Query 117046 GGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCT 117105 ||||| || ||||| |||||| ||||||| || ||| |||||| |||| || ||||| Sbjct 3767 TGCCTTTGCCGCCGTTGAGGGCATCTTCTTCTCTGGCTCCTTCGCCTCCATCTTCTGGCT 3708 Query 117106 CAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGA 117165 |||||| || || || |||||||| || || ||| |||||| |||||||| | ||||| Sbjct 3707 CAAGAAGCGTGGTCTTATGCCCGGTCTCACCTTCTCCAACGAACTCATCTCGCGTGACGA 3648 Query 117166 GGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 |||||| || ||||||||| || | || |||| Sbjct 3647 GGGTCTCCACACCGACTTTGCTTGCCTCCTCTTCA 3613 >seq1 Length=1882320 Score = 141 bits (156), Expect = 1e-28 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || || || ||||| ||| |||| ||||| | | Sbjct 161497 ATGCAAATCTTTGTCAAGACCTTGACAGGTAAGACCATTACCCTCGAAGTCGAGTCTTCG 161438 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || |||| ||||| ||||| |||||| | ||||| Sbjct 161437 GACACCATTGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCCCCTGACCA 161379 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||||||||| || ||||| |||||||| |||| |||||||| ||||||||| Sbjct 161378 GCAGCGACTCATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACCCTTTCCGACTACAA 161319 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| |||||||| |||| || || || || Sbjct 161318 CATTCAGAAGGAATCCACTCTCCACCTCGT 161289 Score = 136 bits (150), Expect = 4e-27 Identities = 160/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || ||||| || ||||||||| | || || || | Sbjct 79210 AACATGCAGATCTTTGTGAAGACCCTTACGGGTAAGACCATCACCCTTGAGGTGGAGTCT 79269 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | |||| |||||| || || | ||||| ||||| |||||| | || Sbjct 79270 TCGGACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGA 79328 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| ||||| |||| ||| || || ||||| || |||| |||||||| ||||| Sbjct 79329 CCAGCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACCCTTTCGGACTA 79388 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||||||| |||| || || || ||| Sbjct 79389 CAACATCCAGAAGGAGTCCACCCTCCACCTTGTG 79422 >seq226 Length=271753 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || |||||||| ||||| || ||||| |||| || || | || Sbjct 170846 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACAATCACGCTCGAGGTTGAGTCTTCC 170905 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || || | |||||| || |||| ||||| ||||| || || | ||||| Sbjct 170906 GACACGATTGACAATG-TCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCA 170964 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||| | ||| || || ||||| || |||| || || || || ||||| Sbjct 170965 GCAACGTCTCATTTTCGCAGGAAAGCAGCTCGAGGACGGACGGACGCTTTCGGATTACAA 171024 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | ||||| ||||| || ||||| Sbjct 171025 CATCCAGAAGGAGTCTACGCTCCATCTCGTTTTGCG 171060 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || |||||||| ||||| || ||||| |||| ||||| | | Sbjct 170618 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACAATCACGCTCGAGGTCGAGTCTTCA 170677 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || |||| ||||| || || || ||| | ||||| Sbjct 170678 GACACCATTGACAACG-TCAAGGCCAAGATTCAGGACAAGGAAGGTATTCCCCCTGACCA 170736 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| || || || ||||| || || | ||||| ||| ||||| || Sbjct 170737 GCAACGTCTCATCTTTGCAGGAAAGCAGCTCGAGGATGGCCGCACGCTCTCGGACTATAA 170796 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||| ||||||||| |||| |||| || ||| | ||| Sbjct 170797 CATTCAGAAGGAGTCCACCTTGCACCTTGTGCTTCGC 170833 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || ||||||||| |||| || || | || Sbjct 169934 ATGCAGATCTTTGTCAAGACTCTGACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCC 169993 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| ||||| || ||| | ||||| Sbjct 169994 GACACCATTGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCA 170052 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || || ||| |||| || | || |||||| || ||||| Sbjct 170053 GCAGCGCCTTATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGAACCCTCTCGGATTACAA 170112 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| |||| || ||||| || Sbjct 170113 CATCCAGAAGGAGTCCACCCTCCATCTCGT 170142 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || ||||| |||||||| | || ||||| | | Sbjct 170162 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACCATCACTTTGGAGGTCGAGTCTTCA 170221 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || |||| ||||| || || || ||| | ||||| Sbjct 170222 GACACCATTGACAACG-TCAAGGCCAAGATTCAGGACAAGGAAGGTATTCCCCCTGACCA 170280 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| || || || ||||| || || | ||||| ||| ||||| || Sbjct 170281 GCAACGTCTCATCTTTGCAGGAAAGCAGCTCGAGGATGGCCGCACGCTCTCGGACTATAA 170340 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||| ||||||||| |||| |||| || ||| | ||| Sbjct 170341 CATTCAGAAGGAGTCCACCTTGCACCTTGTGCTTCGC 170377 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| |||||||| | || ||||| | | Sbjct 171074 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACCATCACTTTGGAGGTCGAGTCTTCA 171133 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || |||| ||||| || || || ||| | |||||| Sbjct 171134 GACACCATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGTATTCCCCCTGACCAG 171193 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| || || || ||||| || || | ||||| ||| ||||||||| Sbjct 171194 CAACGTCTCATCTTTGCAGGAAAGCAGCTCGAGGATGGCCGCACGCTCTCGGACTACAAC 171253 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || ||||||||| ||| |||| || ||| Sbjct 171254 ATTCAGAAGGAGAGCACCTTGCACCTTGTG 171283 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || || ||||| |||| ||||| || | Sbjct 170390 ATGCAGATCTTTGTCAAGACCCTTACTGGTAAGACGATCACACTCGAGGTCGAGTCCTCG 170449 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | |||| | || || | || || ||||| || || | |||||| Sbjct 170450 GATACTATTGACAATGTCAAAGCCAAGATCCAAGATAAGGAGGGTATTCCTCCTGACCAG 170509 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||| | ||| || || || || || || | |||||||| |||||||| Sbjct 170510 CAGCGTCTCATTTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTGTCTGACTACAAT 170569 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | ||||| ||||| || ||||| Sbjct 170570 ATCCAGAAGGAGTCTACGCTCCATCTCGTTTTGCG 170604 >seq247 Length=126104 Score = 102 bits (112), Expect = 8e-17 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 40713 CACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGA 40772 ||| || || ||||| ||| | || || || || | |||| | | | | | |||| Sbjct 70991 CACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTTAAGGC 71050 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || |||| || || ||||| || ||| | |||||||| || || |||| ||| || || Sbjct 71051 CAAGATTCAGGATAAGGAGGGTATTCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAA 71110 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || |||| ||||||||| ||||||||||||||||||||| | || || || Sbjct 71111 GCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTCCA 71170 Query 40893 TCTAGT 40898 || || Sbjct 71171 CCTTGT 71176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217280808480