Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1 113 5e-20 seq226 107 2e-18 >seq1 Length=1882320 Score = 113 bits (124), Expect = 5e-20 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || ||||||||||| ||||| Sbjct 79404 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGACCGTCCTCGAGCTGCTTACCGGCGAA 79345 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || |||||||||||||| | || | | |||||||||| ||| || |||| ||| Sbjct 79344 GATAAGTCGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 79286 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || ||||| || | |||||||| || ||||| || ||||| | Sbjct 79285 TGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTCTTACCCGTAAGGGTCTTCA 79226 Query 43171 CAAAGATTTGCATTTT 43186 ||||||| ||||| || Sbjct 79225 CAAAGATCTGCATGTT 79210 Score = 100 bits (110), Expect = 3e-16 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||| ||||| || | || || || |||| || |||||||| || || || Sbjct 161307 TCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAG 161366 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 ||||||||||||||||| | || | | |||||||||| ||| | || | |||| ||| Sbjct 161367 ATGAGTCGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCC-TGAATCTTGGCCTTGA-CGT 161424 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || || || |||| || ||||| || || || | ||||| | Sbjct 161425 TGTCAATGGTGTCCGAAGACTCGACTTCGAGGGTAATGGTCTTACCTGTCAAGGTCTTGA 161484 Query 43171 CAAAGATTTGCAT 43183 ||||||||||||| Sbjct 161485 CAAAGATTTGCAT 161497 >seq226 Length=271753 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||| | || || || | || || | |||||||||||| || Sbjct 170125 CTCCTTCTGGATGTTGTAATCCGAGAGGGTTCGGCCATCTTCCAACTGCTTACCAGCAAA 170066 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | | |||||||||| ||| || |||| ||| Sbjct 170065 GATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 170007 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || ||||| |||| |||||||| || || || || ||||| | Sbjct 170006 TGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCGGTCAGAGTCTTGA 169947 Query 43171 CAAAGATTTGCAT 43183 ||||||| ||||| Sbjct 169946 CAAAGATCTGCAT 169934 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||| | ||||| ||||||||||| ||||| ||||| || | || || || | Sbjct 171289 ACGGAGCACAAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGGCC 171230 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || || || ||||| || |||||||| | || | | ||||| Sbjct 171229 ATCCTCGAGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTT 171170 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| | || | |||| | | | ||||| || || || || | |||| Sbjct 171169 GTCC-TGAATCTTGGCCTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGTGA 171111 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||| || | ||||| |||||||| ||||| Sbjct 171110 TGGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 171074 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 ||||| || | ||| | || |||||| || |||||||| |||| ||| || || | Sbjct 170604 CGCAAAACGAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCAGACAGGGTGCGGCCA 170545 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || || ||||| || ||||| ||||| ||||||||||| | || | | |||||| Sbjct 170544 TCCTCGAGTTGCTTTCCGGCGAAAATGAGACGCTGCTGGTCAGGAGGAATACCCTCCTTA 170485 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 || ||| || ||||| | | | || || || || || |||| ||||| Sbjct 170484 TCTTGGATCTTGGCTTTGACATTGTCAATAGTATCCGAGGACTCGACCTCGAGTGTGATC 170425 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || || ||||| |||||||| ||||| Sbjct 170424 GTCTTACCAGTAAGGGTCTTGACAAAGATCTGCAT 170390 Score = 89.7 bits (98), Expect = 6e-13 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 ||||| ||| |||||| ||||| || || || | || || || | || || |||||| Sbjct 170364 TGCAAGGTGGACTCCTTCTGAATGTTATAGTCCGAGAGCGTGCGGCCATCCTCGAGCTGC 170305 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 || || || || ||||| || |||||||| | || | | ||||||||| ||| | || Sbjct 170304 TTTCCTGCAAAGATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTTGTCC-TGAATCTT 170246 Query 43101 TGT-TTGAGCGTCGCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 43158 | |||| ||| | || | |||| || || || || | |||||||| ||||| | Sbjct 170245 GGCCTTGA-CGTTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGTGATGGTCTTGCCAG 170187 Query 43159 TTAGCGTCTTTACAAAGATTTGCAT 43183 | | ||||| |||||||||||||| Sbjct 170186 TCAAGGTCTTGACAAAGATTTGCAT 170162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571815469979440