Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq226 122 6e-23 seq1 107 1e-18 >seq226 Length=271753 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | || || || || | ||| || ||||| |||||||| || || Sbjct 171072 CCACCGCGCAGTCGCAAAACGAGATGGAGCGTAGACTCCTTCTGGATGTTGTAATCCGAA 171013 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| || |||| || | |||||| |||||||||||||| || |||||||| || Sbjct 171012 AGCGTCCGTCCGTCCTCGAGCTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCAGGAGGA 170953 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | | |||| |||| || || || Sbjct 170952 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCGGAAGACTCAACC 170893 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||| || ||||| ||||| || || |||||||||||||| Sbjct 170892 TCGAGCGTGATTGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 170846 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | ||||| ||||| || || || || ||||| ||||||||||| || Sbjct 171300 CCGCCACGGAGACGGAGCACAAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGAG 171241 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || || | |||||| ||||| || ||||| || |||||||| ||| Sbjct 171240 AGCGTGCGGCCATCCTCGAGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGGGGA 171181 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | || | | || | || | || ||||| Sbjct 171180 ATACCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATGGTGTCTGAAGACTCGACC 171121 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || | || || |||||||||||||| Sbjct 171120 TCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 171074 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||||| ||||| || || || ||||| ||||| ||||| || Sbjct 170844 CCACCGCGGAGGCGAAGCACAAGGTGCAAGGTGGACTCCTTCTGAATGTTATAGTCCGAG 170785 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || || | |||||| ||||| || ||||| || |||||||| ||| Sbjct 170784 AGCGTGCGGCCATCCTCGAGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGGGGA 170725 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | | | | || | || | || ||||| Sbjct 170724 ATACCTTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCTGAAGACTCGACC 170665 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||| || ||||| ||||| || || |||||||||||||| Sbjct 170664 TCGAGCGTGATTGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 170618 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||| || || || ||| | || ||||||||||| || || || Sbjct 170124 TCCTTCTGGATGTTGTAATCCGAGAGGGTTCGGCCATCTTCCAACTGCTTACCAGCAAAG 170065 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || ||||||||||| ||| | | ||||||||| ||||| ||| | | | Sbjct 170064 ATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 170005 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | |||| || || || || | |||||||| || ||||| ||||| || ||| Sbjct 170004 TCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCGGTCAGAGTCTTGACA 169945 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 169944 AAGATCTGCAT 169934 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | || || || || | ||| || ||||| || |||||||| ||| Sbjct 170616 CCACCGCGCAGTCGCAAAACGAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCAGAC 170557 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||| || ||||||||||| ||||||||||| || Sbjct 170556 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATGAGACGCTGCTGGTCAGGAGGA 170497 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||| || ||||| ||||| | || | | || | ||| | || ||||| Sbjct 170496 ATACCCTCCTTATCTTGGATCTTG-GCTTTGACATTGTCAATAGTATCCGAGGACTCGAC 170438 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || || || || || || || |||||||||||||| Sbjct 170437 CTCGAGTGTGATCGTCTTACCAGTAAGGGTCTTGACAAAGATCTGCAT 170390 >seq1 Length=1882320 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || || ||||| | ||| ||| ||||| |||||||||||||| Sbjct 161271 CCGCCACGAAGACGGAGAACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGAA 161330 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| |||| ||||||||| || || ||||| ||||||||||| ||| Sbjct 161331 AGGGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGG 161390 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | || | || | || ||||| Sbjct 161391 ATTCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCCGAAGACTCGACT 161450 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || ||||| || || || | || || |||||||| ||||| Sbjct 161451 TCGAGGGTAATGGTCTTACCTGTCAAGGTCTTGACAAAGATTTGCAT 161497 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||| ||||| | || || ||||| ||||||||||| || Sbjct 79439 CCACCACGCAGACGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 79380 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | |||||| || ||||| || || ||||||||||| ||| Sbjct 79379 AGGGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGGG 79320 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | || | || | || || || Sbjct 79319 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACC 79260 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || || || || ||||||||||||||||| Sbjct 79259 TCAAGGGTGATGGTCTTACCCGTAAGGGTCTTCACAAAGATCTGCAT 79213 Score = 86.0 bits (94), Expect = 4e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 34249 GCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG 34308 ||| || || ||||| ||||||||||| ||| | | ||||||||| ||||| Sbjct 161585 GCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGAATCTTGGC 161644 Query 34309 CTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAG 34368 ||| | || | | || | || | || ||||| || | |||||||| ||||||||||| Sbjct 161645 CTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAG 161704 Query 34369 AGTTTTCACAAAGATCTGCATC 34390 || || ||||||||||||||| Sbjct 161705 GGTCTTTACAAAGATCTGCATC 161726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323070826642880