Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq79 129 1e-24 seq222 118 2e-21 seq46 86.0 1e-11 >seq79 Length=472637 Score = 129 bits (142), Expect = 1e-24 Identities = 386/594 (65%), Gaps = 9/594 (2%) Strand=Plus/Minus Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||| | ||||||| ||||| || || ||| || || |||||| || | |||||| Sbjct 421548 TACAACTTCTTTGGCTTCAAGACTCTCGAGCGTTCCTACCTCCTCCGCATCAACGGCAAG 421489 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 | || ||| ||||||||| | ||||| || || ||||| || ||| | ||| Sbjct 421488 GTGACCGAGCGACCCCAGCACATGCTCATGCGTGTCGCCGTCGGTATCCACGGCCAGGAC 421429 Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACA 248997 || ||||||| |||| || |||| | ||| | || | || || || | Sbjct 421428 ATCGAGAGCGCCATCGAAACCTACAACCTCATGTCGCAGAAGTGCTTTACCCACGCTTCG 421369 Query 248998 CCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCC 249057 || || |||||||||||||| || || ||||| ||||| || || | || Sbjct 421368 CCCACTCTCTTCAACGCCGGGACACCACACCCCCAGCTCTCGTCGTGTTTCCTCGTCACC 421309 Query 249058 ATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC---GGCGAAGATT 249114 ||| | |||||||| |||| ||||| || ||||| || | |||| || | ||| Sbjct 421308 ATGAAGGACGACTCGATCGATGGCATCTACGACACCCTCA---AGACCTGTGCCATGATC 421252 Query 249115 TCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTAC 249174 || || || || || ||||||||| | || | |||||||| | || |||||| Sbjct 421251 TCCAAGACTGCCGGTGGTATCGGTCTCAACATCCACTGCATCCGAGGTACTGGCTCGTAC 421192 Query 249175 ATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCC 249234 || || || || || ||||| | |||||||| ||| | ||||| ||| | | Sbjct 421191 ATTGCCGGCACCAACGGTGTCAGCAACGGTATCGTGCCCATGCTTCGCGTCTTCAACAAC 421132 Query 249235 ACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTG 249291 || || | | | || |||||| || | || || | || ||||| || | Sbjct 421131 ACGGCTCGCTACGTCGACCAGGGTGGCAACAAGCGTCCCGGTGCCTTTGCCATCTACATT 421072 Query 249292 GAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAG 249351 || |||||| | ||| | || |||||||| ||| | |||||| |||| || ||| Sbjct 421071 GAGCCTTGGCACTCGGATGTGTTCGAGTTCCTCGACCTCCGCAAGAACCACGGTAAGGAG 421012 Query 249352 CTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405 || | || || || |||||||||| || ||||| ||||| | |||||| Sbjct 421011 GAGGTGCGTGCCCGAGAGCTCTTCTACGCACTCTGGGTTCCCGACCTCTTCATG 420958 >seq222 Length=683585 Score = 118 bits (130), Expect = 2e-21 Identities = 235/340 (69%), Gaps = 16/340 (5%) Strand=Plus/Plus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 ||||| || |||| ||| |||| || || || |||||||| || || |||||||| ||| Sbjct 85550 CTTCCCCACATGCTCTTCTACGGCCCACCGGGCACAGGCAAAACTTCCACCATCCTCGCG 85609 Query 254061 CTGGCCCGAACCCTGTT-GGGCGAGGGGAACATGAGAGA-GCGCGTGCTCGAGCTGAACG 254118 || ||| | || || |||| || | |||| ||| ||| ||||||||||| || | Sbjct 85610 CTCGCCAGGCAGCTCTTCGGGCCAGAGTTG-ATGA-AGACGCGAGTGCTCGAGCTCAATG 85667 Query 254119 CTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGAT-G 254177 | || |||||||| || | | ||| ||| | ||||||||||||| |||| ||||| | | Sbjct 85668 CCTCCGACGAACGAGGCATCGCCGTGGTCAGGGACAAGATCAAGAATTTCGCCAAGCTAG 85727 Query 254178 TCGATTTCGTCGTTCC-AACC-------CGGCTGTCCGCCTTTCAAGCTCGTGATCCTGG 254229 || || | ||| || | | ||| ||||| |||||| || | || ||| Sbjct 85728 CCG---TCACCAATCCGAAGCAAGGCTTCCCCTGCCCGCCATTCAAGATCATCATTTTGG 85784 Query 254230 ACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGC 254289 ||||||| |||| |||||| || |||||| || ||| | ||| |||||| | Sbjct 85785 ACGAGGCAGACAGCATGACACAGGATGCGCAGAGTGCGCTCAGGAGAATCATGGAGCAGT 85844 Query 254290 ACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGT 254329 || | | || | || || || ||||||||||| || Sbjct 85845 ACAGCAGGATCACCAGATTCTGTCTCGTGTGCAACTATGT 85884 >seq46 Length=360405 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 115402 ATCGCACATCTGCTCTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATG 115461 || || |||||| ||| || ||||||||||| ||| || | |||||| | | | | Sbjct 299792 ATGGCGCATCTGGACTGGATAGGTTCGATGATCTTGTTGCTCTGGTTGCACGCAAAGCAG 299851 Query 115462 AACCGCGTCGTGCTCGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCAGGT 115521 || || |||||| ||||||| | |||||| | || |||| || || || |||| Sbjct 299852 AAACGTGTCGTGTTCGAGTAGATCTCCATGGTTCGACGCAAGGCTTGTTGTGCTGCAGGC 299911 Query 115522 GTCATCGAGTCTGCCTCGTCGAGAACGACAATCTT 115556 ||||| ||| || |||||||||| ||||||||| Sbjct 299912 GTCATACTGTCGGCTTCGTCGAGAATGACAATCTT 299946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073762300225664