Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1 123 2e-23 seq226 102 6e-17 seq247 91.5 1e-13 >seq1 Length=1882320 Score = 123 bits (136), Expect = 2e-23 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| ||||||||||| || |||| |||| || || || Sbjct 79416 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGACCGTCCTCGAGCTG 79357 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| || | ||||| ||||| || || | |||||||||||| || || Sbjct 79356 CTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTT 79297 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | ||||| | ||||||||| | ||| || ||||| ||||| Sbjct 79296 GGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTCTTACCCGT 79237 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG 45340 || |||||||||||||| ||||||||| Sbjct 79236 AAGGGTCTTCACAAAGATCTGCATGTTG 79209 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||||||||||||||| || ||| |||| ||||| || Sbjct 161294 GTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCCAGCTG 161353 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || ||||| || || | ||||| ||||| || || | |||||||||||| ||| || Sbjct 161354 CTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGAATCTT 161413 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | ||||| | ||| || || | |||||| ||||| || || Sbjct 161414 GGCCTTGACGTTGTCAATGGTGTCCGAAGACTCGACTTCGAGGGTAATGGTCTTACCTGT 161473 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||||||||| Sbjct 161474 CAAGGTCTTGACAAAGATTTGCAT 161497 >seq226 Length=271753 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||||| |||||||||||||||||||||||||| || ||| | || || || || Sbjct 171277 GTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGGCCATCCTCGAGCTG 171218 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||| || || || | || || ||||| || || | ||| ||||||||| ||| || Sbjct 171217 CTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGAATCTT 171158 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| | ||| ||||||| || || |||||||| || Sbjct 171157 GGCCTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGTGATGGTCTTGCCAGT 171098 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| Sbjct 171097 CAAGGTCTTGACAAAGATCTGCAT 171074 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||||| ||| ||||||||||||||| ||||| || ||| | || || || || Sbjct 170365 GTGCAAGGTGGACTCCTTCTGAATGTTATAGTCCGAGAGCGTGCGGCCATCCTCGAGCTG 170306 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||| || || || | || || ||||| || || | ||| ||||||||| ||| || Sbjct 170305 CTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGAATCTT 170246 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| | ||| ||||||| || || |||||||| || Sbjct 170245 GGCCTTGACGTTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGTGATGGTCTTGCCAGT 170186 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||||||||| Sbjct 170185 CAAGGTCTTGACAAAGATTTGCAT 170162 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || || ||| ||||||||| |||||||| || || || | || |||| || Sbjct 170136 TGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTTCGGCCATCTTCCAACTGC 170077 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || || || || || | ||||| ||||| || || | ||||||||||||| || || Sbjct 170076 TTACCAGCAAAGATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTG 170017 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | |||| | ||||||||| | ||| || ||||| || ||| Sbjct 170016 GCCTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCGGTC 169957 Query 45314 AGAGTCTTCACAAAGATTTGCATG 45337 |||||||| |||||||| |||||| Sbjct 169956 AGAGTCTTGACAAAGATCTGCATG 169933 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | || || || || | || ||||| ||||||||| |||||||| || Sbjct 171072 CCACCGCGCAGTCGCAAAACGAGATGGAGCGTAGACTCCTTCTGGATGTTGTAATCCGAA 171013 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || |||| || || || ||||| ||||| || | || || ||||| ||||| Sbjct 171012 AGCGTCCGTCCGTCCTCGAGCTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCAGGAGGA 170953 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||||||| ||| || ||| || | | |||| | ||| ||| Sbjct 170952 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCGGAAGACTCAACC 170893 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || |||||||| || || ||||| |||||||| ||||| Sbjct 170892 TCGAGCGTGATTGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 170846 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||||| ||| ||||||||||||||| ||||| || ||| | || || || || Sbjct 170821 GTGCAAGGTGGACTCCTTCTGAATGTTATAGTCCGAGAGCGTGCGGCCATCCTCGAGCTG 170762 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||| || || || | || || ||||| || || | ||| ||||||||| ||| || Sbjct 170761 CTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGAATCTT 170702 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| | ||| ||||| | || || |||||||| || Sbjct 170701 GGCCTTGACGTTGTCAATGGTGTCTGAAGACTCGACCTCGAGCGTGATTGTCTTGCCTGT 170642 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| Sbjct 170641 GAGCGTCTTGACAAAGATCTGCAT 170618 >seq247 Length=126104 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || ||| |||| || || || || |||||||| Sbjct 71159 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAA 71100 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| ||||| |||||||| || | ||||||||| ||| ||| || |||||| Sbjct 71099 GATCAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTATCCTGAATCTTGGCCTTAACATT 71040 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | | | ||||| ||||||||| | |||||| ||||| || || Sbjct 71039 GTCGATGGTGTCCGAGGACTCCACCTCAAGGGTAATGGTCTTACCTGT 70992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395073765136258