Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq79 363 1e-95 seq236 163 3e-35 seq226 95.1 1e-14 seq1 93.3 4e-14 >seq79 Length=472637 Score = 363 bits (402), Expect = 1e-95 Identities = 657/957 (69%), Gaps = 8/957 (1%) Strand=Plus/Plus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 || ||||||||||| ||||| || || ||||||||| | ||||||| | || ||| Sbjct 420626 GCAATCGAGGCAAGGTTGCACACAGCGACCTCGTCTGGCGCACTGTACTCGATGATCTCG 420685 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 ||||| || ||| ||||| || ||||| | || |||||||||| || || ||| Sbjct 420686 GTACACAGGTTGGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCA 420745 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200 | |||||||||||| ||| |||| | || |||||| ||||||||||| ||| || | Sbjct 420746 GCATCCTTGTAGAGGATGAACGGGTTACCAGTCTCGGTCTGCGACTCGAGGATGGCGTAC 420805 Query 23201 CACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTAC 23260 || | ||||||| | || ||| | | | || || ||||||| | ||| Sbjct 420806 CAGAGCTTCTGAGCCTTGACGGTGCGCTTGGAACGACCCTCGGCCTCGTAGCGCTCGTAG 420865 Query 23261 AACGCG-TCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACAT 23319 | ||| ||||| ||| |||| || |||||||| || ||||| | | | || ||||| Sbjct 420866 AG-GCGCTCAAACTCGTCACCATAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACAT 420924 Query 23320 GAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGC 23379 ||| ||| | || | || || | |||| || || || || | ||| || || Sbjct 420925 GAGCGACCAGTCTCCGTTCTGCTCGACCCTCTTCATGAAGAGGTCGGGAACCCAGAGTGC 420984 Query 23380 GTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAA 23439 |||||| || || ||||| ||||||||||| || ||| |||||| | || | || Sbjct 420985 GTAGAAGAGCTCTCGGGCACGCACCTCCTCCTTACCGTGGTTCTTGCGGAGGTCGAGGAA 421044 Query 23440 GTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATT 23499 || ||||| |||| ||||| ||||| | ||| | |||||| || || || | ||| || Sbjct 421045 CTCGAACACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTT 421104 Query 23500 GCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACC 23559 ||| ||||| |||||||| || |||||||||||| | || | ||||| ||||||| ||| Sbjct 421105 GCCACCCTGGTCGACGTAGCGAGCCGTGTTGTTGAAGACGCGAAGCATGGGCACGATACC 421164 Query 23560 GTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTG 23619 |||| | ||| ||| || | ||| || | |||| | | ||| | || Sbjct 421165 GTTGCTGACACCGTTGGTGCCGGCAATGTACGAGCCAGTACCTCGGATGCAGTGGATGTT 421224 Query 23620 GAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGAT 23679 || ||| || || ||| | | || || ||||| || || || || ||||||||||| Sbjct 421225 GAGACCGATACCACCGGCAGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGAT 421284 Query 23680 GCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGG 23739 ||| ||||| ||| || || | | ||| | ||||||||| || | || | | || Sbjct 421285 GCCATCGATCGAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTGGGGGTGTGG 421344 Query 23740 CGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATT 23799 || |||| ||| || || || ||||| |||||| | | |||||| || || Sbjct 421345 TGTCCCGGCGTTGAAGAGAGTGGGCGAAGCGTGGGTAAAGCACTTCTGCGACATGAGGTT 421404 Query 23800 GTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCAT 23859 ||| || ||||||||| || ||||||| ||||| ||||||| |||||| ||||| | Sbjct 421405 GTAGGTTTCGATGGCGCTCTCGATGTCCTGGCCGTGGATACCGACGGCGACACGCATGAG 421464 Query 23860 CATGTATTGAGGTCTCTCG---ACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTG 23916 ||||| || |||| |||| ||| | |||||| || || || || ||||| | Sbjct 421465 CATGTGCTGGGGTCGCTCGGTCACCTT---GCCGTTGATGCGGAGGAGGTAGGAACGCTC 421521 Query 23917 CATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 | || || || ||||| ||| |||| ||||| || |||| | |||||||| Sbjct 421522 GAGAGTCTTGAAGCCAAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATGGCCGA 421578 Score = 183 bits (202), Expect = 3e-41 Identities = 523/780 (67%), Gaps = 37/780 (5%) Strand=Plus/Plus Query 22115 GTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTCTTCAGA 22174 |||||||| |||||| | | || || ||||| || || ||||| | || ||||| || Sbjct 419720 GTAAACTGGATGGCGCTCGATGCGGGCTTGGTACGCAGGTAATAGGTACCGGTCTTGAGC 419779 Query 22175 CCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAGTCCAT- 22233 ||| ||||||| ||||||| || || || || | | ||| | | || || | | Sbjct 419780 CCCTTCTTCCAGCCGTAAAAGTGCATTGAAGTAAGCTGGCCAAAGGTGGG--AGCCGAGA 419837 Query 22234 -GTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTA 22292 || | |||| |||||| ||| ||| || || ||||| ||||||||||| | | Sbjct 419838 GGTGGATGTTGAGCGACTGTGACTGGCAGATGAAGGCGCCTCGGTCGGCGGCCATGTCGA 419897 Query 22293 TCAATGTACGCATCGAC-ATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGG- 22350 | | || | | | || ||||| ||||||||||| || | | |||| | ||| Sbjct 419898 TGA-TGGCCTTTTGGCTGATCTCCCACACGGTCTTGTAAAGCTTCTTGATG-CGGTCGGG 419955 Query 22351 --TATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTA 22408 || || || |||||| || || | | ||||| || || ||||| Sbjct 419956 AATACCGGGCACAT--TCTGGATCGAGCCACCGTGGGCGATGATGCGGTTCTTCATCGTG 420013 Query 22409 TCGTTCCACAAACCGATGGCGGTCAAA-TCTTTGACCAGATGACGGTTCACCACTTGAAA 22467 |||||||||| ||| || | ||| || || || |||| ||||| || || Sbjct 420014 TCGTTCCACAGACCC-TGCTCGACAAGCTCGCGGAGCAACCAGGGGTTAACCACCTGGAA 420072 Query 22468 CTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATT 22527 ||| |||| | || ||||| ||| |||||||||||| |||| || || | || || Sbjct 420073 CTCTCCGGCGAGCACACGGCGCGAGTAGATGTTGGATGTGTACGGCTCAAAGCACTCGTT 420132 Query 22528 GTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCT 22587 | || || |||||| ||||| ||||| ||||| || || | || | ||||| | Sbjct 420133 GAAGCCGAGAATCTGACTCGTCGAGGCGGTAGGCATGGGGGCGAGGAGCAAGGAGTTGCG 420192 Query 22588 CAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGT 22647 || |||||||| | ||| || ||||||| | |||||||||||| || || || || Sbjct 420193 CAGACCGTGCTTGGCAATCTTGGCCTTGAGCTCAGCCCAGTCCCACAGGTCCGATGGGGT 420252 Query 22648 CACATTGTCCCACATATCGTATTGCA--ACACGCCGCGACTCGCCGGGCTGCCTTCGTAC 22705 ||| ||||||| || || |||| ||| | |||| || || ||| ||||| Sbjct 420253 GACA---CCCCACATGTCATACTGCAGCTCACCCTGCGA--AGCAGGCGAGCCGGCGTAC 420307 Query 22706 GTTTCGTACGGACCAT-ATATCGCGGCAAGTTCGCA-GCTCGCCTCCAACGCGCCGTAAT 22763 || ||||||| || | | | | || || ||||| | ||| ||| | ||| ||| | Sbjct 420308 GTCTCGTACGTGCCGTGCTCTTG-AGCCAGCTCGCACGATCG-CTCGAGCGCAGCGTGGT 420365 Query 22764 ATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCG-GC----GGCGACGCTTTCGTACGG 22818 | |||||||| ||||| | | ||| || |||||| || |||||| ||| || | Sbjct 420366 AAATAGTCTCAAAGATCTGCACGTT-AAGTCGGCGAGCCTCGGGCGAC----TCGAAC-G 420419 Query 22819 CATA-CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGT 22877 | || | ||| |||| ||| ||||| || | ||||||||| || |||||||| ||||||| Sbjct 420420 CGTAGCCCATGATCATGAAGGCGTCAGCAAGACCCTGAACACCGATACCGATGGGTCGGT 420479 >seq236 Length=132806 Score = 163 bits (180), Expect = 3e-35 Identities = 389/577 (67%), Gaps = 37/577 (6%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || || || || ||||||| ||| || | |||||| Sbjct 4180 ATCTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACCGCCGAGGAGATTGACCTG 4121 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTCAAA--GAATCT----GAGAGAAATTTTATT 57683 || |||||||| ||||||||| | ||| ||||| ||| | | || || Sbjct 4120 TCCAAGGATCTTCACGATTGGGA---CAACAAGCTGAATCACAACGAGCGTCACTTCATC 4064 Query 57684 AAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAA 57743 ||||| | || || |||||||| ||||| ||||| || |||||||| | ||||| Sbjct 4063 TCCCACGTCCTCGCCTTCTTCGCCGCTTCCGACGGTATCGTCAACGAGAACCTTGTCGAG 4004 Query 57744 AGATTTTCACAA--GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGG 57801 | ||||| || ||||| | | ||||| ||||||| || || || || | Sbjct 4003 CG--TTTCAGCTCCGAGGTGCAGGCCGCCGAGGCTCGATGCTTCTATGGTTTCCAGATCA 3946 Query 57802 CCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACA 57861 || || ||| | || || | || ||||| |||||||| || ||| | | Sbjct 3945 TGATGGAGAACATCCACAGCGAGACCTACTCGCTGCTCATCGACACCTACAT------CC 3892 Query 57862 ACGA---CGAGAAACGT-AGA--CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCA 57915 ||| |||| | || || || || |||| |||| ||||| |||| ||| || Sbjct 3891 GCGAGCCCGAGCAGCGCGAGTTCCTCTTTGACGCTGTCGAGACAATCCCCG---TCGTCA 3835 Query 57916 AG---AAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCC--ACG-GCCACGTTCGCCG 57969 || ||||| || ||| | | ||||| | ||| | ||| || || ||||||| Sbjct 3834 AGGAGAAGGCCGACTGGGCTCTTCGCTGGATCA---GCGACCGACGCGCTACCTTCGCCG 3778 Query 57970 AGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAA 58029 || | || | || || |||||||| || || || ||||| || ||| ||| || | | Sbjct 3777 AGCGTCTCGTTGCCTTTGCCGCCGTTGAGGGCATCTTCTTCTCTGGCTCCTTCGCCTCCA 3718 Query 58030 TATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATAT 58089 | || ||| | ||||| || || || |||||||| || || || |||||| | || | Sbjct 3717 TCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTCACCTTCTCCAACGAACTCATCT 3658 Query 58090 CGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCT 58126 |||| |||||||||||||| || || ||||| ||||| Sbjct 3657 CGCGTGACGAGGGTCTCCACACCGACTTTGCTTGCCT 3621 >seq226 Length=271753 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||||||||| || || || |||||| |||| || || | || Sbjct 169933 CATGCAGATCTTTGTCAAGACTCTGACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTC 169992 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | ||||| | || ||||||||| || | || || ||||| Sbjct 169993 CGACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCA 170052 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || ||||| || ||||||||||| || | ||||| || Sbjct 170053 GCAGCGCCTTATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGAACCCTCTCGGATTACAA 170112 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || || || || ||||| || ||| | || | || |||| Sbjct 170113 CATCCAGAAGGAGTCCACCCTCCATCTCGTCCTTCGCCTCCGTGGTGGTA 170162 >seq1 Length=1882320 Score = 93.3 bits (102), Expect = 4e-14 Identities = 166/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| ||||||| || || || ||| |||| || || | || Sbjct 161497 ATGCAAATCTTTGTCAAGACCTTGACAGGTAAGACCATTACCCTCGAAGTCGAGTCTTCG 161438 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||| || | || || |||||| Sbjct 161437 GACACCATTGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCCCCTGACCAG 161378 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || || ||||| ||| |||||||| || | ||| || ||| Sbjct 161377 CAGCGACTCATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACCCTTTCCGACTACAAC 161318 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAGCGG 31428 ||||| || ||||| ||||| || || || || | || | |||||| ||||||| Sbjct 161317 ATTCAGAAGGAATCCACTCTCCACCTCGTTCTCCGTCTTCGTGGCGGTGCCAAGAAGCGC 161258 Query 31429 TG 31430 || Sbjct 161257 TG 161256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764739520160