Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq236 118 2e-21 seq79 87.8 4e-12 >seq236 Length=132806 Score = 118 bits (130), Expect = 2e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||||||||| || ||||| || |||||||| ||| | ||||| ||||| |||||| Sbjct 3769 GTTGCCTTTGCCGCCGTTGAGGGCATCTTCTTCTCTGGCTCCTTCGCCTCCATCTTCTGG 3710 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | ||| || |||| |||||||||| |||||| || |||| || | ||| Sbjct 3709 CTCAAGAAGCGTGGTCTTATGCCCGGTCTCACCTTCTCCAACGAACTCATCTCGCGTGAC 3650 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 || ||||| || ||||||||| ||| | || || Sbjct 3649 GAGGGTCTCCACACCGACTTTGCTTGCCTCCTCTT 3615 >seq79 Length=472637 Score = 87.8 bits (96), Expect = 4e-12 Identities = 174/255 (68%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 94786 CCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCC 94845 |||| || || |||||||||||||| || || ||| || || || || || || Sbjct 421229 CCGATACCACCGGCAGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATGCCA 421288 Query 94846 TCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAG-TTGGGGTGTGACTGT 94904 || || || || | | | | ||||| ||||| || || | |||||||| ||| Sbjct 421289 TCGATCGAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTGGGGGTGTG-GTGT 421347 Query 94905 TCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATA 94964 || || || || ||||| ||||| |||||||| | | | ||||||||| | || Sbjct 421348 CCCGGCGTTGAAGAGAGTGGGCGAAGCGTGGGTAAAGCACTTCTGCGACATGAGGTTGTA 421407 Query 94965 TGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCAT 95024 ||||| ||| | | |||||| ||||| || ||||| || |||||||| | ||| Sbjct 421408 GGTTTCGATGGCGCTCTCGATGTCCTGGCCGTGGATACCGACGGCGACACGCATGAGCAT 421467 Query 95025 GTCCTGAGGGCGCTC 95039 || ||| || ||||| Sbjct 421468 GTGCTGGGGTCGCTC 421482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989580221644590