Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq57 127 1e-24 seq236 95.1 9e-15 >seq57 Length=374387 Score = 127 bits (140), Expect = 1e-24 Identities = 116/144 (81%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 33575 AGATGGGCGACAAGTTTGCATCGTTC-ACGGCCCAGAAGGGCACGTGCGGCATGATGTAC 33633 ||| ||||||||||||||| ||| | |||||| ||||||||||| |||||| | ||| Sbjct 304182 AGACGGGCGACAAGTTTGCGTCGCGCCACGGCC-AGAAGGGCACGATCGGCATCACGTAT 304124 Query 33634 GACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGTCATCAACCCG 33693 ||| ||||||||||||| ||||||| || ||| |||||| | ||||||||||| Sbjct 304123 CGGCAGGAGGACATGCCGTTCTCGGCCGAAGGTGTGACACCGGACATTATCATCAACCCG 304064 Query 33694 CATGCGTTCCCCTCGCGCATGACG 33717 || ||| |||| |||||||||||| Sbjct 304063 CACGCGATCCCGTCGCGCATGACG 304040 >seq236 Length=132806 Score = 95.1 bits (104), Expect = 9e-15 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 22741 CGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATA 22800 |||||| | |||||||| || ||||| ||| || | || ||||| || || || |||| Sbjct 3775 CGTCTCGTTGCCTTTGCCGCCGTTGAGGGCATCTTCTTCTCTGGCTCCTTCGCCTCCATC 3716 Query 22801 TTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGC 22860 |||||||| ||||| ||| || ||||| || | | || |||||||| | || Sbjct 3715 TTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTCACCTTCTCCAACGAACTCATCTCG 3656 Query 22861 CGTGACGAAGGTCTACACTGTGACTTTGCTTG 22892 |||||||| ||||| ||| ||||||||||| Sbjct 3655 CGTGACGAGGGTCTCCACACCGACTTTGCTTG 3624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356232306204094