Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq226 86.0 6e-12 >seq226 Length=271753 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || ||||||||||| || | |||| || |||||||| || || Sbjct 170358 GTGGACTCCTTCTGAATGTTATAGTCCGAGAGCGTGCGGCCATCCTCGAGCTGCTTTCCT 170299 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| |||| ||||||||||| || || || || ||||| ||||| ||| | || | || Sbjct 170298 GCAAAGATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTTGTC-CTGAATCTTGGCCTT 170240 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| | | ||| ||||| | || | |||||||| ||||| || Sbjct 170239 GACGTTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGTGATGGTCTTGCCAGTCAAGGT 170180 Query 139747 TTTTACGAATATTTGCATA 139765 || || || ||||||||| Sbjct 170179 CTTGACAAAGATTTGCATA 170161 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||||||| | || | ||||||||| || || ||||| ||||| | || | | Sbjct 171060 CGCAAAACGAGATGGAGCGTAGACTCCTTCTGGATGTTGTAATCCGAAAGCGTCCGTCCG 171001 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || |||||||| || || || | || ||||||||||| || ||||| || || || ||| Sbjct 171000 TCCTCGAGCTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCAGGAGGAATACCCTCCTTG 170941 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | || | | || | ||||||| | ||| ||||| | || | Sbjct 170940 TC-CTGAATCTTGGCCTTGACATTGTCAATCGTGTCGGAAGACTCAACCTCGAGCGTGAT 170882 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||||| || | ||| || || || || |||||| Sbjct 170881 TGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCATA 170845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496062152161600