Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq79 120 4e-22 >seq79 Length=472637 Score = 120 bits (132), Expect = 4e-22 Identities = 569/897 (63%), Gaps = 8/897 (1%) Strand=Plus/Plus Query 71773 CACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 71832 ||||||||||| || | || | || || ||||| ||| |||||||| || || Sbjct 420701 CACTTGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGG 420760 Query 71833 ATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGC 71891 || ||||| ||||||| || |||| || || | || || | ||||| | || |||| Sbjct 420761 ATGAACGGGTTACCAGTCTCGGTCTGCGACTCGAGGATGGCGTACCAGA-GCTTCTGAGC 420819 Query 71892 CTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTC 71951 ||| | | |||| | | || ||||| | || | || || ||||| Sbjct 420820 CTTGACGGTGCGCTTGGAACGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTC 420879 Query 71952 GTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTC 72010 ||| || | ||| | | | | || || || || || || ||||| | ||||| |||| Sbjct 420880 GTCACCATA-GCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATGAGCGACCAGTCTC 420938 Query 72011 CATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 72070 | | | | || | ||||| ||||| || |||| ||| || || || || |||| Sbjct 420939 CGTTCTGCTCGACCCTCTTCATGAAGAGGTCGGGAACCCAGAGTGCGTAGAAGAGCTCTC 420998 Query 72071 TGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 72130 || | |||||| || || ||||| || ||||||||| | | | ||| | Sbjct 420999 GGGCACGCACCTCCTCCTTACCGTGGTTCTTGCGGAGGTCGAGGAACTCGAACACATCCG 421058 Query 72131 AATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTA 72190 | ||||| || || | ||| ||||| | | || || || ||||| || ||||| || | Sbjct 421059 AGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGA 421118 Query 72191 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCAT 72250 ||| | ||| ||||| || | || | | ||| || | ||||| ||| |||| | Sbjct 421119 CGTAGCGAGCCGTGTTGTTGAAGACGCGAAGCATGGGCACGATACCGTTGCTGACACCGT 421178 Query 72251 TGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCC 72308 |||| |||| || || ||| | | || || | || |||| |||| || || Sbjct 421179 TGGTGCCGGCAATGTACGAGCCAGTACCTCGGATGCAGTGGATGTTGA--GACCGATACC 421236 Query 72309 CCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACT 72368 || || | || ||||| | || || || | || || |||||||| || || Sbjct 421237 ACCGGCAGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATGCCATCGATCGA 421296 Query 72369 ATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATT 72428 || ||| ||||| | | || ||||| || | ||| | | || || || || Sbjct 421297 GTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTGGGGGTGTGGTGTCCCGGCGTT 421356 Query 72429 AAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT 72488 || | || || |||||||| ||||| || || | |||| || ||||| || || || Sbjct 421357 GAAGAGAGTGGGCGAAGCGTGGGTAAAGCACTTCTGCGACATGAGGTTGTAGGTTTCGAT 421416 Query 72489 AGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGG 72548 || || || ||| || || || || ||||||||||| | ||| ||||| || Sbjct 421417 GGCGCTCTCGATGTCCTGGCCGTGGATACCGACGGCGACACGCATGAGCATGTGCTGGGG 421476 Query 72549 TCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACC 72608 || || | |||| || || | | |||||| || | ||| || || || Sbjct 421477 TCGCTCGGTCACCTTGCCGTTGATGCGGAGGAGGTAGGAACGCTCGAGAGTCTTGAAGCC 421536 Query 72609 AAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTT 72665 ||| ||||||| ||||| || ||||| || || |||| | ||| | ||||| Sbjct 421537 AAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATGGCCGAGTCGAGCTGGTCCTT 421593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136700006480