Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq236 201 2e-46 seq79 172 8e-38 seq13 87.8 3e-12 >seq236 Length=132806 Score = 201 bits (222), Expect = 2e-46 Identities = 393/564 (70%), Gaps = 20/564 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| |||||| |||| ||||| ||||| | ||| ||| | || ||| Sbjct 4180 ATCTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACCGCCGAGGAGATTGACCTG 4121 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || |||||||||| | ||| | | | ||||| | || || || Sbjct 4120 TCCAAGGATCTTCACGATTGGGACAACAAGCTGAATCACAACGAGCGTCACTTCATCTCC 4061 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||| | | |||||||| |||| ||||| || ||||||||||| || || || || || Sbjct 4060 CACGTCCTCGCCTTCTTCGCCGCTTCCGACGGTATCGTCAACGAGAACCTTGTCGAG-CG 4002 Query 125198 ATTCT-CTCAAGAGTTGACCATTCCA--GAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253 ||| ||| ||| || || || |||| ||| ||||| || || ||||| |||| Sbjct 4001 TTTCAGCTCC-GAGGTG--CAGGCCGCCGAGGC-TCGATGCTTCTATGGTTTCCAGATCA 3946 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC 125313 |||| |||||| | ||| || | ||||| || || |||| ||||| ||||| | Sbjct 3945 TGATGGAGAACATCCACAGCGAGACCTACTCGCTGCTCATCGACACCTACATCCGCGAGC 3886 Query 125314 C---GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCC-GTCTATACGTAAA 125369 | ||| || | | |||||| |||| |||| || | || ||| | | | | Sbjct 3885 CCGAGCAGCGCGAGTTC---CTCTTTGACGCTGTCGAGACAATCCCCGTCGTCAAGGAGA 3829 Query 125370 AAGGCTCAATGGGTGATTCGGTGGATCGATGAC-GACAAGTCTTCGTACGCCGACAGACT 125428 | ||| | |||| |||| |||||| ||| ||| | || | | |||||| | || Sbjct 3828 A-GGCCGACTGGGCTCTTCGCTGGATCAGCGACCGACGCG-CTACCTTCGCCGAGCGTCT 3771 Query 125429 GGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTG 125488 || || || |||||||| |||||||||||||| || || || || ||||||| || Sbjct 3770 CGTTGCCTTTGCCGCCGTTGAGGGCATCTTCTTCTCTGGCTCCTTCGCCTCCATCTTCTG 3711 Query 125489 GCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGA 125548 |||||||||||| || || |||||||| || || | ||||| | || || || || Sbjct 3710 GCTCAAGAAGCGTGGTCTTATGCCCGGTCTCACCTTCTCCAACGAACTCATCTCGCGTGA 3651 Query 125549 CGAGGGCCTACACTGTGACTTTGC 125572 |||||| || ||| |||||||| Sbjct 3650 CGAGGGTCTCCACACCGACTTTGC 3627 >seq79 Length=472637 Score = 172 bits (190), Expect = 8e-38 Identities = 341/502 (68%), Gaps = 2/502 (0%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | ||| ||||| | || ||||||||| |||| Sbjct 421113 CAGGGTGGCAACAAGCGTCCCGGTGCCTTTGCCATCTACATTGAGCCTTGGCACTCGGAT 421054 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || |||| | ||||| ||| || || |||| || ||| | || Sbjct 421053 GTGTTCGAGTTCCTCGACCTCCGCAAGAACCACGGTAAGGAGGAGGTGCGTGCCCGAGAG 420994 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || ||||||||||| || || | ||||||||| | ||| | | || || Sbjct 420993 CTCTTCTACGCACTCTGGGTTCCCGACCTCTTCATGAAGAGGGTCGAGCAGAACGGAGAC 420934 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 ||| || ||||||||| || || |||||||| |||| |||| || || |||||| Sbjct 420933 TGGTCGCTCATGTGCCCCAACGAGTGCCCCGGTCTTGCCGACTGCTATGGTGACGAGTTT 420874 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGA 97175 ||| | ||| | ||||||| ||||| || | | | | ||| | || | | Sbjct 420873 GAGCGCCTCTACGAGCGCTACGAGGCCGAGGGTCGTTCCAAGCGCACCGTCAAGGCTC-A 420815 Query 97176 GAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTA 97234 ||| || ||| | |||||| | | | ||| |||||||| | |||| ||| ||||| Sbjct 420814 GAAGCTCTGGTACGCCATCCTCGAGTCGCAGACCGAGACTGGTAACCCGTTCATCCTCTA 420755 Query 97235 CAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAA 97294 ||||||| | | || ||||| |||||||| || | |||||||||||| ||||||| Sbjct 420754 CAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACCATCAAGTGCTCCAA 420695 Query 97295 TCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGC 97354 ||||| || || || | |||||| | || |||||| || || ||| || || Sbjct 420694 CCTGTGTACCGAGATCATCGAGTACAGTGCGCCAGACGAGGTCGCTGTGTGCAACCTTGC 420635 Query 97355 ATCGGTCAATCTGCCCAAGTTT 97376 ||| | ||||||| |||| Sbjct 420634 CTCGATTGCGCTGCCCACGTTT 420613 >seq13 Length=403507 Score = 87.8 bits (96), Expect = 3e-12 Identities = 170/251 (68%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506 ||||| || |||||||| || ||| || |||| |||||||| | | || || | Sbjct 375214 CCGTGGGTGAGGTGGCCGCCCGAGGGGAGGCCGAGACCCATGATACGGTCCTGAGGCTGG 375155 Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566 | || ||||| | |||||||||||| | ||||| ||||| || || || || Sbjct 375154 AGGAGAGCAGTGAAGGTGGCAAAGTTGGCGGTGGAGCCAGAGTAAGGCTGGACGTTGACG 375095 Query 127567 CCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCG 127626 ||||| || || | ||||| || |||| |||||||| || | ||| Sbjct 375094 CCCCACACGTTGGGGTCGAGGTTGAAAGCCTTGAGCGCACGCTGCTGGCAGAGAACCTCG 375035 Query 127627 ATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGAGTAC 127686 | | || || ||||||||||||| |||||||| ||||| |||||| |||||| Sbjct 375034 AGCTGGTCAATGTACTCGTTACCACCGTAGTATCGGGCGCCGGGGAGACCCTCAGAGTAC 374975 Query 127687 TTGTTGATGAG 127697 |||||| |||| Sbjct 374974 TTGTTGGTGAG 374964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741056439554480