Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq226 156 1e-32 seq1 122 2e-22 seq247 96.9 8e-15 >seq226 Length=271753 Score = 156 bits (172), Expect = 1e-32 Identities = 162/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | ||||| || ||||| ||||| |||||||| || || | || || || Sbjct 170598 ACGAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCAGACAGGGTGCGGCCATCCTCG 170539 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| ||||| || ||||| || | ||| || |||||||| || || || ||||| || Sbjct 170538 AGTTGCTTTCCGGCGAAAATGAGACGCTGCTGGTCAGGAGGAATACCCTCCTTATCTTGG 170479 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTT 104529 ||||| ||||| ||||| || | ||||| | ||| || ||||| ||||| || ||||| Sbjct 170478 ATCTTGGCTTTGACATTGTCAATAGTATC-CGAGGACTCGACCTCGAGTGTGATCGTCTT 170420 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||||| || || ||||| |||||||| Sbjct 170419 ACCAGTAAGGGTCTTGACAAAGATCTGCAT 170390 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || || || || || |||||||| |||||||| || || || | || || Sbjct 170830 AAGCACAAGGTGCAAGGTGGACTCCTTCTGAATGTTATAGTCCGAGAGCGTGCGGCCATC 170771 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || ||||| ||||| || || | || || ||||| || || ||||| || || Sbjct 170770 CTCGAGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTTGTC 170711 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || || || || || | ||| || || || ||||| || || || || Sbjct 170710 CTGAATCTTGGCCTTGACGTTGTCAATGGTGTCTGAAGACTCGACCTCGAGCGTGATTGT 170651 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || || || || ||||| |||||||| Sbjct 170650 CTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 170618 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | ||||| || ||||| || || || || || || || | ||||| || Sbjct 171054 ACGAGATGGAGCGTAGACTCCTTCTGGATGTTGTAATCCGAAAGCGTCCGTCCGTCCTCG 170995 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || ||||| || ||||| || | || || |||||||| || || || || |||||| Sbjct 170994 AGCTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGA 170935 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || || ||||| || | || ||| || || ||||| || || || ||||| Sbjct 170934 ATCTTGGCCTTGACATTGTCAATCGTGTCGGAAGACTCAACCTCGAGCGTGATTGTCTTG 170875 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| |||||||| Sbjct 170874 CCTGTGAGCGTCTTGACAAAGATCTGCAT 170846 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || || || || || |||||||| |||||||| || || || | || || Sbjct 170374 AAGCACAAGGTGCAAGGTGGACTCCTTCTGAATGTTATAGTCCGAGAGCGTGCGGCCATC 170315 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || ||||| ||||| || || | || || ||||| || || ||||| || || Sbjct 170314 CTCGAGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTTGTC 170255 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || || || || || | ||| || || || ||||| | || || || Sbjct 170254 CTGAATCTTGGCCTTGACGTTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGTGATGGT 170195 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| | || || ||||| || ||||| Sbjct 170194 CTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 170162 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || |||||||| || ||||| || || || | || || || || || ||||| ||||| Sbjct 171264 TCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGGCCATCCTCGAGCTGCTTTCCTGCAAAG 171205 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | || || ||||| || || ||||| || ||||||||||| || || ||||| Sbjct 171204 ATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGAATCTTGGCCTTGACATTG 171145 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||| || || || ||||| | || || ||||| ||||| | || || ||| Sbjct 171144 TCAATGGTGTCTGAAGACTCGACCTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTGACA 171085 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 171084 AAGATCTGCAT 171074 >seq1 Length=1882320 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| |||||||| || ||||| || || || | |||||||| || || || || Sbjct 161301 GTGGATTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCCAGCTGCTTGCCG 161360 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || ||||| || ||||| || || ||||||||||| || || Sbjct 161361 GCAAAGATGAGTCGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTG 161420 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || || || || ||||| |||||||| || | || Sbjct 161421 ACGTTGTCAATGGTGTCCGAAGACTCGACTTCGAGGGTAATGGTCTTACCTGTCAAGGTC 161480 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 161481 TTGACAAAGATTTGCAT 161497 Score = 95.1 bits (104), Expect = 3e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || ||||| || || | ||| || ||||| || ||||| || || ||||||||||| || Sbjct 161586 CCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGAATCTTGGCC 161645 Query 104480 TTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 || ||||| || | ||| || | ||| || ||||| || || || ||||| || || || Sbjct 161646 TTGACATTGTCGATGGTGTC-CGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAG 161704 Query 104539 TGTTTTTACAAATATCTGCAT 104559 || |||||||| |||||||| Sbjct 161705 GGTCTTTACAAAGATCTGCAT 161725 >seq247 Length=126104 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || || || | || || || ||||| || || ||||| Sbjct 71197 ATTCCACCACGCAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCC 71138 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||||| || || || || || || || || || | ||| || || || Sbjct 71137 GAGAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGG 71078 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTC 104508 || || || || |||||||||||||| || || ||||| || | ||| || | ||| || Sbjct 71077 GGAATACCCTCCTTATCCTGAATCTTGGCCTTAACATTGTCGATGGTGTC-CGAGGACTC 71019 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || ||||| |||||||| || ||||| Sbjct 71018 CACCTCAAGGGTAATGGTCTTACCTGT--GTGTT 70987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151394003816984