Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq226 118 1e-21 seq1 96.9 3e-15 >seq226 Length=271753 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| | |||||| || || ||||| || | |||||| || | ||| | |||||| Sbjct 170827 CACAAGGTGCAAGGTGGACTCCTTCTGAATGTTATAGTCCGAGAGCGTGCGGCCATCCTC 170768 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| ||||| ||||||| | | |||||| || || ||||||||||| ||||| | Sbjct 170767 GAGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTTGTCCTG 170708 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || ||||||||| | | | ||||| | ||||| || | |||||| || || Sbjct 170707 AATCTTGGCCTTGACGTTGTCAATGGTGTCTGAAGACTCGACCTCGAGCGTGATTGTCTT 170648 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || |||||||||||||| Sbjct 170647 GCCTGTGAGCGTCTTGACAAAGATCTGCAT 170618 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| | |||||| || || ||||| || | |||||| || | ||| | |||||| Sbjct 170371 CACAAGGTGCAAGGTGGACTCCTTCTGAATGTTATAGTCCGAGAGCGTGCGGCCATCCTC 170312 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| ||||| ||||||| | | |||||| || || ||||||||||| ||||| | Sbjct 170311 GAGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTTGTCCTG 170252 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || ||||||||| | | | ||||| | ||||| || | |||||||| || Sbjct 170251 AATCTTGGCCTTGACGTTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGTGATGGTCTT 170192 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | || || |||||||| ||||| Sbjct 170191 GCCAGTCAAGGTCTTGACAAAGATTTGCAT 170162 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| ||||| ||||| ||||||| | | |||||| || || ||||||||||| || Sbjct 171229 ATCCTCGAGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTT 171170 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || |||||||| | | | ||||| | ||||| || | ||||| Sbjct 171169 GTCCTGAATCTTGGCCTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGTGAT 171110 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| | || || |||||||||||||| Sbjct 171109 GGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 171074 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || | || |||||| || | || | ||||| ||||| || | || || || | Sbjct 170616 CCACCGCGCAGTCGCAAAACGAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCAGAC 170557 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | |||||| || || |||||| | || || | | ||||| || |||||| Sbjct 170556 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATGAGACGCTGCTGGTCAGGAGGA 170497 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||| || || || | || || || ||||| | | | ||| || | | ||||| Sbjct 170496 ATACCCTCCTTATCTTGGATCTTGGCTTTGACATTGTCAATAGTATCCGAGGACTCGACC 170437 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||| || || |||||||| || || |||||||||||||| Sbjct 170436 TCGAGTGTGATCGTCTTACCAGTAAGGGTCTTGACAAAGATCTGCAT 170390 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || | || |||||| || | || | ||||| ||||| || | ||| ||||| Sbjct 171072 CCACCGCGCAGTCGCAAAACGAGATGGAGCGTAGACTCCTTCTGGATGTTGTAATCCGAA 171013 Query 94841 ATAGT--GTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || || | ||||| ||||| ||||| | || || | | |||||| || |||| Sbjct 171012 AGCGTCCGTCCG--TCCTCGAGCTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCAGGAG 170955 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 ||||||| || ||||| | ||| || |||||||| | | | ||||| | || | Sbjct 170954 GAATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCGGAAGACTCAA 170895 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | |||||| || || || || || || || |||||||||||||| Sbjct 170894 CCTCGAGCGTGATTGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 170846 Score = 86.0 bits (94), Expect = 6e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| ||| || || ||||||| | | ||||| || || |||||||| || || Sbjct 170089 ATCTTCCAACTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTT 170030 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||||||| | | | ||||| | || || || | ||||| Sbjct 170029 GTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGAT 169970 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||| || || || ||||| || ||||||||||||||| Sbjct 169969 GGTCTTACCGGTCAGAGTCTTGACAAAGATCTGCATG 169933 >seq1 Length=1882320 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || ||| | ||||| | || ||||| || || || || || || ||| Sbjct 79367 TCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGGGATTCCCTCCTTG 79308 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||||| | ||| ||||| | || || |||| |||||| Sbjct 79307 TCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATG 79248 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || ||||| || |||||||||||||||||| Sbjct 79247 GTCTTACCCGTAAGGGTCTTCACAAAGATCTGCATG 79212 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 ||| ||||||| | || ||||| || || || || || || ||||| | ||| || ||| Sbjct 161586 CCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGAATCTTGGCC 161645 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 ||||| | ||| ||||| | | ||||| || | |||||||| || || || || Sbjct 161646 TTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGG 161705 Query 94988 GTTTTCACAAAGATCTGCAT 95007 || || |||||||||||||| Sbjct 161706 GTCTTTACAAAGATCTGCAT 161725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448289530115280