Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1 123 2e-23 seq226 109 5e-19 seq236 107 2e-18 seq247 91.5 1e-13 >seq1 Length=1882320 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| | || | ||| |||||||| || |||||||| || Sbjct 79439 CCACCACGCAGACGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 79380 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || ||| |||| | ||||||||||| || ||| Sbjct 79379 AGGGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGGG 79320 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||||| | || | || || | ||||| | Sbjct 79319 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACC 79260 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| ||||| || || || || || || ||||||||| Sbjct 79259 TCAAGGGTGATGGTCTTACCCGTAAGGGTCTTCACAAAGATCTGCATG 79212 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || ||||| ||||||||||| ||| | |||||| ||| || ||||||||||| Sbjct 161301 GTGGATTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCCAGCTGCTTGCCG 161360 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || |||| | ||||||||||| || |||||||| || ||||| || || |||| Sbjct 161361 GCAAAGATGAGTCGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTG 161420 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || || | ||||||| |||| ||||| ||| ||||| || | || Sbjct 161421 ACGTTGTCAATGGTGTCCGAAGACTCGACTTCGAGGGTAATGGTCTTACCTGTCAAGGTC 161480 Query 131218 TTTACGAAAATCTGCAT 131234 || || || || ||||| Sbjct 161481 TTGACAAAGATTTGCAT 161497 >seq226 Length=271753 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||| | ||| |||||||| || ||||||||||| Sbjct 170160 CCACCACGGAGGCGAAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAG 170101 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || | |||||| || || |||| | ||||||||||| || || Sbjct 170100 AGGGTTCGGCCATCTTCCAACTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGGGGA 170041 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 170040 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCCACC 169981 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGAC 131237 |||| ||| | ||| |||||||| ||||| || || || ||||||||||| Sbjct 169980 TCGAGGGTGATGGTCTTACCGGTCAGAGTCTTGACAAAGATCTGCATGAC 169931 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| |||| || | ||| | || |||||||| || || ||||| || | Sbjct 170616 CCACCGCGCAGTCGCAAAACGAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCAGAC 170557 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| || ||||| || ||| | || | |||||||||||| ||||| Sbjct 170556 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATGAGACGCTGCTGGTCAGGAGGA 170497 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || ||| || |||| | || | |||||| | |||||||| Sbjct 170496 ATACCCTCCTTATCTTGGATCTTGGCTTTGACATTGTCAATAGTATCCGAGGACTCGACC 170437 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || ||||| || || || || || || |||||||| Sbjct 170436 TCGAGTGTGATCGTCTTACCAGTAAGGGTCTTGACAAAGATCTGCAT 170390 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| |||| || | ||| | || |||||||| || ||||||||||| Sbjct 171072 CCACCGCGCAGTCGCAAAACGAGATGGAGCGTAGACTCCTTCTGGATGTTGTAATCCGAA 171013 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| |||||||| |||||| | || | ||| |||||||| ||||| Sbjct 171012 AGCGTCCGTCCGTCCTCGAGCTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCAGGAGGA 170953 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | || |||| ||||| | Sbjct 170952 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCGGAAGACTCAACC 170893 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || || || || || || || || || |||||||| Sbjct 170892 TCGAGCGTGATTGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 170846 >seq236 Length=132806 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 46100 AGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGTA 46159 |||| |||||||||| | ||||||| | | | ||| || |||||||||||| Sbjct 3831 AGAAGGCCGACTGGGCTCTTCGCTGGATCAGCGACCGACGCGCTACCTTCGCCGAGCGTC 3772 Query 46160 TGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTT 46219 | || |||||||| || |||||| |||| || |||||| || ||| ||||||| | Sbjct 3771 TCGTTGCCTTTGCCGCCGTTGAGGGCATCTTCTTCTCTGGCTCCTTCGCCTCCATCTTCT 3712 Query 46220 ACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGC 46278 |||| || | || | | |||||||| || || || |||||| || || ||||| Sbjct 3711 GGCTCAAGAAGCGTGGTC-TTATGCCCGGTCTCACCTTCTCCAACGAACTCATCTCGCGT 3653 Query 46279 GACGAGGGCCTGCATACGGACTTTGCGTGTCTC 46311 |||||||| || || || |||||||| || ||| Sbjct 3652 GACGAGGGTCTCCACACCGACTTTGCTTGCCTC 3620 >seq247 Length=126104 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || | || | |||||||||||| || |||||||| || Sbjct 71194 CCACCACGCAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 71135 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || ||| |||| | ||||||||||| || || Sbjct 71134 AGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGA 71075 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || || || ||| | | || | || || | |||||| | Sbjct 71074 ATACCCTCCTTATCCTGAATCTTGGCCTTAACATTGTCGATGGTGTCCGAGGACTCCACC 71015 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 || | ||||| ||| ||||| || Sbjct 71014 TCAAGGGTAATGGTCTTACCTGT 70992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472011041752320