Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq13 145 5e-30 seq1 140 2e-28 seq226 82.4 5e-11 >seq13 Length=403507 Score = 145 bits (160), Expect = 5e-30 Identities = 218/307 (71%), Gaps = 6/307 (2%) Strand=Plus/Minus Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTA 6246 |||| | ||| ||||||||| ||| ||||| | | || ||||| ||||||||| Sbjct 178618 ATGTCGACGACAAGTTCTACCGATACCGCATGCCTCTCCTCCAGACCAAGATCGAGGGTA 178559 Query 6247 AGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGAC 6306 |||| |||||||| || |||||||| ||| ||| | || | ||| ||||| | | Sbjct 178558 AGGGCAACGGTATCAAGACCGTCATCCCCAATATGTCCGACATTGCTCGCTCGCTCAGCC 178499 Query 6307 GCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTG 6366 ||||| | |||||||| || |||| || || ||||| ||||| || ||||| ||| | Sbjct 178498 GCCCTCCTACCTACCCCACCAAATTCTTTGGCTGCGAGCTTGGTGCCCAGACCTCGTTCG 178439 Query 6367 ATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAA---GCTGCAGG 6423 | | || ||||| |||| |||||| ||||| ||| | || ||||| || | | Sbjct 178438 ACGAAAAGAACGACCGCTACATCGTCAACGG--CGC-TCACGACGCCAACCGTCTCCGAG 178382 Query 6424 ACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGA 6483 | | || |||||||| || ||||||||| || || | || ||| | ||||| |||| Sbjct 178381 AGCTGCTCGACGGCTTCATCGACAAGTTTGTCCTCTGCGGCGACTGCAAGAACCCCGAGA 178322 Query 6484 CCGAGCT 6490 |||| || Sbjct 178321 CCGATCT 178315 >seq1 Length=1882320 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1101187 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1101246 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1101247 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1101281 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 1103195 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 1103254 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||||||| Sbjct 1103255 CCCAATATTTAGCCTTA 1103271 >seq226 Length=271753 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 ||||| || | | ||| | ||| | || | ||||||||||| ||||| ||||| || Sbjct 171303 TTACCGCCACGGAGACGGAGCACAAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCC 171244 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 || | || | || || | || ||||| ||||| || || ||||| || || | | Sbjct 171243 GAGAGCGTGCGGCCATCCTCGAGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGG 171184 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 || | ||||| |||||| ||| || ||| ||||| | | || ||| | || Sbjct 171183 GGAATACCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATGGTGTCTGAAGACTCG 171124 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || || || || || |||||||| || || || |||||||| Sbjct 171123 ACCTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 171074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945983513638