Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1 120 3e-22 >seq1 Length=1882320 Score = 120 bits (132), Expect = 3e-22 Identities = 152/207 (73%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| ||||| ||||| |||| || ||||||| ||||| || Sbjct 161497 ATGCAAATCTTTGTCAAGACCTTGACAGGTAAGACCATTACCCTCGAAGTCGAGTCTTCG 161438 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| | || || | ||| ||||| || || || || ||||| Sbjct 161437 GACACCATTGACAACGTCA---AGGCCAAGATTCAG-GACAAGGAGGGAATCCCCCCTGA 161382 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || ||||||||||| || | ||||| | ||||| | ||| || Sbjct 161381 CCAGCAGCGACTCATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACCCTTTCCGACTA 161322 Query 25175 CAATATTCAAAAAGAATCCACGCTACA 25201 ||| ||||| || |||||||| || || Sbjct 161321 CAACATTCAGAAGGAATCCACTCTCCA 161295 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/144 (74%), Gaps = 6/144 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| | ||||| || ||||||| |||| || ||||| || Sbjct 161725 ATGCAGATCTTTGTAAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCG 161666 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || | || || | ||| ||||| || || || || |||||| Sbjct 161665 GACACCATCGA--CAATGTCAAGGCCAAGATTCA-GGACAAGGAGGGAATCCCCCCTGAC 161609 Query 25116 CAACAGCGGATTATTTTTGCCGGC 25139 || ||||| | || ||||||||| Sbjct 161608 CAGCAGCGACTCATCTTTGCCGGC 161585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326426206870