Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq236 170 2e-37 >seq236 Length=132806 Score = 170 bits (188), Expect = 2e-37 Identities = 375/559 (67%), Gaps = 5/559 (1%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||||||||| || | ||| ||||| || || || | || ||| ||| || | Sbjct 3623 GCAAGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGTTCGTTGGAGAAGGTGAG 3682 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 ||| || | || || || ||||||||||| || || || || || ||||| || || Sbjct 3683 ACCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCAGAGAAGAA 3742 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 || || || ||||| ||||| || || | ||| ||||| || | ||| ||| Sbjct 3743 GATGCCCTCAACGGCGGCAAAGGCAACGAGACGCTCGGCGAAGGTAGCGCGTCGGTCGCT 3802 Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTT 93330 |||||| | |||||| ||||| || | ||| | || | ||| |||| ||||| Sbjct 3803 GATCCAGCGAAGAGCCCAGTCGGCCTTCTCCTTGACGACGGGGATTGTCTCGACAGCGTC 3862 Query 93331 AAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACAT 93390 ||| ||| | || |||| || | || || ||||| || ||||| | ||| || || | Sbjct 3863 AAAGAGGAACTCGCGCTGCTCGGGCTCGCGGATGTAGGTGTCGATGAGCAGCGAGTAGGT 3922 Query 93391 TTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450 || |||| |||||||| || ||||| || ||||| |||| ||| || | | Sbjct 3923 CTCGCTGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGCGGC 3982 Query 93451 CTGCACTTCTTGAG-AAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTG 93509 |||||| || ||| || | ||| || || || || ||||| ||||| ||||| || | Sbjct 3983 CTGCACCTC-GGAGCTGAAACGCTCGACAAGGTTCTCGTTGACGATACCGTCGGAAGCGG 4041 Query 93510 CaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC---TTATCCC 93566 | || || || | | || || || || ||| | | || ||| || |||| Sbjct 4042 CGAAGAAGGCGAGGACGTGGGAGATGAAGTGACGCTCGTTGTGATTCAGCTTGTTGTCCC 4101 Query 93567 AATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTT 93626 ||||| ||||| || || || || | || ||| | ||||| || || || || || | Sbjct 4102 AATCGTGAAGATCCTTGGACAGGTCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCAGCCT 4161 Query 93627 TTTTGTACATATCCCATAT 93645 | |||||||| | ||| || Sbjct 4162 TCTTGTACATTTGCCAGAT 4180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556858725693520