Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq226 136 3e-27 seq1 122 7e-23 seq247 102 7e-17 >seq226 Length=271753 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || ||||| ||| |||| || || || || || | Sbjct 170390 ATGCAGATCTTTGTCAAGACCCTTACTGGTAAGACGATCACACTCGAGGTCGAGTCCTCG 170449 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || ||||| || || ||||| |||||||||||||| || || || Sbjct 170450 GATACTATTGACAATGTCAAAGCCAAGATCCAAGATAAGGAGGGTATTCCTCCTGACCAG 170509 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || ||||| || || | |||||| ||||||| | || || ||||| Sbjct 170510 CAGCGTCTCATTTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTGTCTGACTACAAT 170569 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | ||| | ||||||||| ||||||| ||| Sbjct 170570 ATCCAGAAGGAGTCTACGCTCCATCTCGTTTTGCGACTGCGCGGTGGT 170617 Score = 134 bits (148), Expect = 1e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | |||||||| || |||| || || ||||| | || Sbjct 169934 ATGCAGATCTTTGTCAAGACTCTGACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCC 169993 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || || ||||||||||||||||| || || || Sbjct 169994 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAG 170053 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| ||||| || || ||||| || ||| ||| ||| |||| ||||||||| Sbjct 170054 CAGCGCCTTATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGAACCCTCTCGGATTACAAC 170113 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 || || || || |||||| | ||| Sbjct 170114 ATCCAGAAGGAGTCCACCCTCCAT 170137 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| || || || || | || Sbjct 170846 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACAATCACGCTCGAGGTTGAGTCTTCC 170905 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || ||||| ||||||||||||||||| || || || Sbjct 170906 GACACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAG 170965 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || || || ||| | ||||| || || | || ||||||||| Sbjct 170966 CAACGTCTCATTTTCGCAGGAAAGCAGCTCGAGGACGGACGGACGCTTTCGGATTACAAC 171025 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | ||| | ||||||||| ||||||| ||| Sbjct 171026 ATCCAGAAGGAGTCTACGCTCCATCTCGTTTTGCGACTGCGCGGTGGT 171073 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || || || || ||||| | || || || | | Sbjct 171074 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACCATCACTTTGGAGGTCGAGTCTTCA 171133 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || ||||| |||||||| |||||||| || || || Sbjct 171134 GACACCATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGTATTCCCCCTGACCAG 171193 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| || || ||| | |||||| |||||| |||| || |||||| Sbjct 171194 CAACGTCTCATCTTTGCAGGAAAGCAGCTCGAGGATGGCCGCACGCTCTCGGACTACAAC 171253 Query 22399 ATTCAAAAAGA 22409 ||||| || || Sbjct 171254 ATTCAGAAGGA 171264 >seq1 Length=1882320 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || || ||||| || | || || ||||| || | | Sbjct 161497 ATGCAAATCTTTGTCAAGACCTTGACAGGTAAGACCATTACCCTCGAAGTCGAGTCTTCG 161438 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || ||||| ||||||||||| || || || || || Sbjct 161437 GACACCATTGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCCCCTGACCAG 161378 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||||||||| ||| | || || ||||||| | ||||| |||||| Sbjct 161377 CAGCGACTCATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACCCTTTCCGACTACAAC 161318 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || |||||||| Sbjct 161317 ATTCAGAAGGAATCCAC 161301 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| || || | || ||||| || |||| ||||| ||||| | Sbjct 79210 AACATGCAGATCTTTGTGAAGACCCTTACGGGTAAGACCATCACCCTTGAGGTGGAGTCT 79269 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | ||| | |||| || || || ||||||||||| || || || || Sbjct 79270 TCGGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGAC 79329 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || ||||| || ||||| || ||| | ||||| |||||| | || || ||| Sbjct 79330 CAGCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACCCTTTCGGACTAC 79389 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || || || |||||| Sbjct 79390 AACATCCAGAAGGAGTCCACC 79410 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 || ||||||| || ||||| || || | ||||| || || ||||||| || || || Sbjct 161730 TACAGATGCAGATCTTTGTAAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGT 161671 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 || | || ||| | ||| || |||| || ||||| ||||||||||| || || || | Sbjct 161670 CCTCGGACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCCCCTG 161611 Query 22334 ATCAACAACGTCTTATATTTGCCGGC 22359 | || || || || || ||||||||| Sbjct 161610 ACCAGCAGCGACTCATCTTTGCCGGC 161585 >seq247 Length=126104 Score = 102 bits (112), Expect = 7e-17 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || ||||| || | || ||||| ||||| || | || ||| | ||| || | || Sbjct 70992 ACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTTAAGGCC 71051 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| || |||||||||||||| ||||| || || || || || || ||||| || Sbjct 71052 AAGATTCAGGATAAGGAGGGTATTCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAAG 71111 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | ||||| ||||||| |||| || |||||||| || || || || ||| Sbjct 71112 CAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACC 71165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726475600370