Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq212 98.7 2e-15 seq288 93.3 9e-14 >seq212 Length=199245 Score = 98.7 bits (108), Expect = 2e-15 Identities = 159/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| || || |||| | ||||||||||| || |||| ||||||||||| ||| Sbjct 105971 GGTGAGGACCTTTGCAACTGCCAGTTCTCGCTCGCCTACGGTGCCAAGATTCTGCTCAAC 105912 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || || |||| |||||||||| || ||| |||||| ||||| || || | Sbjct 105911 ACTGCCACCCTCCGTCTCAAGCGTGGTCACAAGTACGGTCTCTGCGGTCGTAACGGTTCC 105852 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATT-TCCTAACGC 279523 || ||| || || ||||| ||||| | ||||| ||| | || || || ||| | | Sbjct 105851 GGAAAGTCGACGCTCATGCGTGCCATCACCAACGGCCAGGTCGAGGGCTTCCCCTCGCCC 105792 Query 279524 ATCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCT 279569 | ||||| | || ||| || ||||||||| ||||| |||| Sbjct 105791 GAC-GAGGTCCGAACCTGGTACGTCGAGCACGACCTCGACGGCTCT 105747 Score = 93.3 bits (102), Expect = 9e-14 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || ||||| ||| |||||||||| || || |||| || || || || ||| || || Sbjct 105140 GGCCCCAACGGTTCGGGTAAGTCGACGCTTGTCAAGCTCGTGGTCGGTGACACCGAGCCC 105081 Query 280239 A-CTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGC 280297 | || || | | | |||||||| |||||| || || | ||||||||| |||||||| Sbjct 105080 AACTCGGGTGAGC-TCTGGAAGCACCCCAACTTGGTCATTGGTTACGTCGCCCAGCACGC 105022 Query 280298 TTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTA 280357 ||||||||||| || | ||||| |||| ||| || | | ||||| | ||||| || Sbjct 105021 CTTCCACCACATTGACCAGCACCTCGACAAGACCCCCCTCGACTACATGCTCTGGCGTTA 104962 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 280680 GGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAG 280739 ||||| || | |||||| || | ||| ||| ||||||||||| || || |||||| Sbjct 104529 GGTCTCGAGCGCGAGTTCACTTCGCACAACACCATGCGCGGTCTTTCCGGTGGTCAGAAG 104470 Query 280740 GTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAG 280799 ||||| | ||| |||| || || |||| | || ||| | ||||||||||| ||| Sbjct 104469 GTCAAGGTCGTCCTCGGCGCTGCCACCTGGCGTAAGCCCCACATTATCGTTCTCGATGAG 104410 Query 280800 CCTACCAACTATCTGGACCGCGAG 280823 || ||||||| ||||||| ||| Sbjct 104409 CCCACCAACTTCTTGGACCGTGAG 104386 >seq288 Length=590259 Score = 93.3 bits (102), Expect = 9e-14 Identities = 217/321 (68%), Gaps = 16/321 (5%) Strand=Plus/Minus Query 218693 CTGGCTACCATCACGGTGA-GCAGAG--TCTGCAGGGTGCCATTGTAGGCATGGCACAGG 218749 ||| |||||||||||| || || | | | ||||| ||||||| || | || ||| Sbjct 297902 CTGCCTACCATCACGGAGATGCTGCGCTTGTGCAGA---CCATTGTCGGTCTCGCCCAGA 297846 Query 218750 ACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTC 218809 ||| |||||| || |||||| | || ||||| |||| |||||||| ||| | ||| Sbjct 297845 ACTTTGTGGGAAGCAACAACGTAAATTTGCTCGAGCCCAGGGGTCAGTTCGGTACACGTT 297786 Query 218810 TATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGA 218869 | ||||||||||||||| ||||| | | || |||||||| | | | |||| || Sbjct 297785 TGTTGGGTGGAAAGGATGCCGCTTCGGGACGATACATCTTTAC--CGCTCT-GCCCAAGA 297729 Query 218870 -----CGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGA 218924 || ||| ||||| |||||||| || | ||| || | || || || ||||| Sbjct 297728 TTGCCCGTGCC--TTGTTCCCGCAGGCCGACGACGCGCTACTCGACTACCTGGATGACGA 297671 Query 218925 TGGTTCTTCGATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGG 218984 |||| | | ||||| | |||||| | || | || ||||| | ||||| Sbjct 297670 TGGTCAAAAGGTAGAGCCACACTGGTATATTCCCGTGGCACCCCAGGTGCTCATGAATGG 297611 Query 218985 TGCCAATGGTATCGGGACAGG 219005 ||| | |||||||| || || Sbjct 297610 TGCTGAAGGTATCGGCACGGG 297590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027832875590618