Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq226 176 8e-39 seq1 158 2e-33 seq247 123 5e-23 seq236 113 8e-20 seq212 113 8e-20 seq79 96.9 6e-15 >seq226 Length=271753 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| | || | ||| | |||||||| || || |||||||| || ||| Sbjct 170388 CCACCGCGGAGGCGAAGCACAAGGTGCAAGGTGGACTCCTTCTGAATGTTATAGTCCGAG 170329 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || ||||| | ||| ||||| || ||| Sbjct 170328 AGCGTGCGGCCATCCTCGAGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGGGGA 170269 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| |||||||| ||||||||| || |||||||||| || || || Sbjct 170268 ATACCTTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCTGAAGACTCGACC 170209 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| || || || | ||||||||| || || ||||| Sbjct 170208 TCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 170162 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| | || | ||| | |||||||| || || |||||||| || ||| Sbjct 170844 CCACCGCGGAGGCGAAGCACAAGGTGCAAGGTGGACTCCTTCTGAATGTTATAGTCCGAG 170785 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || ||||| | ||| ||||| || ||| Sbjct 170784 AGCGTGCGGCCATCCTCGAGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGGGGA 170725 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| |||||||| ||||||||| || |||||||||| || || || Sbjct 170724 ATACCTTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCTGAAGACTCGACC 170665 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || || ||||| |||||||| || |||||||| Sbjct 170664 TCGAGCGTGATTGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 170618 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68232 TTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCG 68291 || || || || || || | || | ||| | ||| ||| || || ||||| || || Sbjct 171303 TTACCGCCACGGAGACGGAGCACAAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCC 171244 Query 68292 GAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGT 68351 ||||| || | ||||| || | |||||| || || || ||||| | ||| ||||| || Sbjct 171243 GAGAGCGTGCGGCCATCCTCGAGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGG 171184 Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT 68411 ||||| ||||||||||| |||||||| |||||||| || |||||||||| || || Sbjct 171183 GGAATACCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATGGTGTCTGAAGACTCG 171124 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| |||||||| || || || | ||||||||| || |||||||| Sbjct 171123 ACCTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 171074 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || ||||| || | || ||||| ||||| || ||||| || || || || Sbjct 170616 CCACCGCGCAGTCGCAAAACGAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCAGAC 170557 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||| |||||||| ||||| | || ||||| || ||| Sbjct 170556 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATGAGACGCTGCTGGTCAGGAGGA 170497 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| ||||| ||||| || ||||| || || || || | || || || Sbjct 170496 ATACCCTCCTTATCTTGGATCTTGGCTTTGACATTGTCAATAGTATCCGAGGACTCGACC 170437 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || || || ||||||||||| || |||||||| Sbjct 170436 TCGAGTGTGATCGTCTTACCAGTAAGGGTCTTGACAAAGATCTGCAT 170390 >seq1 Length=1882320 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || |||||||| || |||||||| || || || Sbjct 79439 CCACCACGCAGACGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 79380 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || |||| || ||||| || || Sbjct 79379 AGGGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGGG 79320 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||||||| ||||||||||| | || || || Sbjct 79319 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACC 79260 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || ||||| |||||||| || || |||||||| Sbjct 79259 TCAAGGGTGATGGTCTTACCCGTAAGGGTCTTCACAAAGATCTGCAT 79213 Score = 113 bits (124), Expect = 8e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 ||||| || ||||||| || ||||| || || || || |||||||| |||||||| ||| Sbjct 161586 CCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGAATCTTGGCC 161645 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 ||||| ||||||||||| | || || || || | |||||||| || || |||||| Sbjct 161646 TTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGG 161705 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||| || || |||||||| Sbjct 161706 GTCTTTACAAAGATCTGCAT 161725 >seq247 Length=126104 Score = 123 bits (136), Expect = 5e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || || | || | ||| || || ||||| || |||||||| || || | Sbjct 71196 TTCCACCACGCAGACGGAGGACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCG 71137 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 |||| || | || || || | |||||| |||||||| || || | || |||||||| | Sbjct 71136 AGAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCGGGGG 71077 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| || ||||| || |||||||| ||||| || ||||||||||| | || || | Sbjct 71076 GAATACCCTCCTTATCCTGAATCTTGGCCTTAACATTGTCGATGGTGTCCGAGGACTCCA 71017 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTG 68438 | || | ||| ||||| || || ||| Sbjct 71016 CCTCAAGGGTAATGGTCTTACCTGTG 70991 >seq236 Length=132806 Score = 113 bits (124), Expect = 8e-20 Identities = 359/544 (66%), Gaps = 17/544 (3%) Strand=Plus/Plus Query 10253 GTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCATGAGCCC 10312 |||||| |||||||| || ||||| |||||||| || ||||||||||| || || Sbjct 3638 GTGGAGACCCTCGTCACGCGAGATGAGTTCGTTGGAGAAGGTGAGACCGGGCATAAGACC 3697 Query 10313 CCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGA--CCCTCCACG 10370 || || |||||||| |||| | ||| || || |||| |||||| ||||| ||| Sbjct 3698 ACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCAGAGA--AGAAGATGCCCTCAACG 3755 Query 10371 CACACCCAGGCGACGAGGCGCTCTGCGAAGG-AGCG-GTCGCGCGAAAAGTATTTCGA-- 10426 | |||| ||||| ||||| ||||||| |||| |||| || | | ||| Sbjct 3756 GCGGCAAAGGCAACGAGACGCTCGGCGAAGGTAGCGCGTCGGTCGCTGA-TCCAGCGAAG 3814 Query 10427 GGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGATAGCCTCGAAGAG---CTT 10483 ||||| | ||||||| ||| | ||||| ||||||| ||| || ||||| || Sbjct 3815 AGCCCAGTCGGCCTTCTCCTTGACGACGGGGATTGTCTCGACAGCGTCAAAGAGGAACTC 3874 Query 10484 GTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGGGAGTATTGCTCGCTGTG 10543 | |||||| |||| | | || | || | |||||| ||||| ||||||||| Sbjct 3875 GCGCTGCTCGGGCTCG--CGGATGTAG-GTGTCGATGAGCAGCGAGTAGGTCTCGCTGTG 3931 Query 10544 GACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATACGTGCCGAGGGGTCCGTGACTT 10602 || | |||| | |||| || | ||||| ||| || ||| || | || || | Sbjct 3932 GATGTTCTCCATCATGATCTGGAAACCATAGAAGCAT-CGAGCCTCGGCGGCCTGCACCT 3990 Query 10603 CCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGC 10662 | | || | | |||||||| | || || || ||| | || |||||| Sbjct 3991 CGGAGCTGAAACGCTCGACAAGGTTCTCGTTGACGATACCGTCGGAAGCGGCGAAGAAGG 4050 Query 10663 CGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCTACCA 10722 |||||| ||| ||||||||| ||||| | | ||||| || | ||| || | Sbjct 4051 CGAGGACGTGGGAGATGAAGTGACGCTCGTTGTGATTCAGCTTGTTGTCCCAATCGTGAA 4110 Query 10723 CATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACA 10782 ||||| | || | | |||||| |||||||||| | || | ||||||||||||| Sbjct 4111 GATCCTTGGACAGGTCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCAGCCTTCTTGTACA 4170 Query 10783 TCTG 10786 | || Sbjct 4171 TTTG 4174 >seq212 Length=199245 Score = 113 bits (124), Expect = 8e-20 Identities = 353/543 (65%), Gaps = 14/543 (3%) Strand=Plus/Plus Query 225458 GAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGCGTGATGAGC 225517 ||||| || || |||||||||| | || || | ||| ||||| | ||| | Sbjct 105445 GAGTCATGCGAGACAATGATGGCGGTGGCGGTCTTGAGGTTGACGAGGTAGTCGGTGATC 105504 Query 225518 CATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGCA 225577 || |||||| |||||||| |||||| || || ||||| || || || ||||| || Sbjct 105505 CACTTGACGTTGACGACGTCCAAGTGGTTGGTGGGCTCGTCGAGGAGGAGAATGTCGGCC 105564 Query 225578 TCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAGCCG 225637 | | |||||||| || | || | | |||||| ||||| || ||||| || | || Sbjct 105565 TTGAACAGGATGGCACGGGCAAGGGCGACCTTCATCTTCCAACCACCGGAGAGACCGGCG 105624 Query 225638 ATTGAAACAGAGTGCTTA---GCTTCGTCAAAGCCGTACTCCAGGAGCGTCTGGATAATG 225694 || | |||| || | || ||||| |||||| ||| |||| || || | Sbjct 105625 ATGGGC---GAGTTCTGACGGGCATCGTCGAAGCCGACCTCGTGGAGGGTGGCGACAGCC 105681 Query 225695 CGCTCGGGAGAGCTGC-GAGCGGCAACGTTGGGGTCGGACGAGAGGTAATCATATACGGT 225753 ||| | | ||| ||| || ||| |||| || | | || || || Sbjct 105682 TCGTCGCGGGTCATGCTGAGGCGC----TTG---TCGGCAAGGATGAACTCGAGGACAGT 105734 Query 225754 CATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCTGAGAAGC 225813 |||| |||| |||| | |||||| || |||||| || |||| || | Sbjct 105735 CATGGTACCCTCAGAGCCGTCGAGGTCGTGCTCGACGTACCAGGTTCGGACCTCGTCGGG 105794 Query 225814 ATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGC 225873 |||||||||||| | |||||| || | || ||||| | || || ||| || | Sbjct 105795 CGAGGGGAAGCCCTCGACCTGGCCGTTGGTGATGGCACGCATGAGCGTCGACTTTCCGGA 105854 Query 225874 GCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTT 225933 ||||| ||||| ||| ||||| | | || ||||||| |||| | | ||| Sbjct 105855 ACCGTTACGACCGCAGAGACCGTACTTGTGACCACGCTTGAGACGGAGGGTGGCAGTGTT 105914 Query 225934 CAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTC 225993 || || |||||| |||| ||||| || ||||||| ||| | ||| |||||||||||||| Sbjct 105915 GAGCAGAATCTTGGCACCGTAGGCGAGCGAGAACTGGCAGTTGCAAAGGTCCTCACCCTC 105974 Query 225994 CTC 225996 ||| Sbjct 105975 CTC 105977 >seq79 Length=472637 Score = 96.9 bits (106), Expect = 6e-15 Identities = 244/371 (66%), Gaps = 0/371 (0%) Strand=Plus/Plus Query 31713 TCGTCCGTAGAAGTGTATTCGACAATCTCGGCACAAAGATTGCTGCCCGTGATGGTGCCG 31772 ||||| | | | |||| |||| ||||||| ||| || ||| || | ||||||||||| Sbjct 420656 TCGTCTGGCGCACTGTACTCGATGATCTCGGTACACAGGTTGGAGCACTTGATGGTGCCG 420715 Query 31773 GCATTGGACTGCATGTTCTTCACGTTCACGCTGTCCTTGTTGAGCACGTAAGGCATGCCC 31832 || ||| || |||| ||| | ||||||| ||| | | | || | || Sbjct 420716 AGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGGATGAACGGGTTACCA 420775 Query 31833 GTCTCGATCTGCGTGATGATCATCGCATTCCAGACATCGCGCGCTTTGACGACTTTCTTC 31892 |||||| |||||| || || || | ||||| | | || |||||| ||| Sbjct 420776 GTCTCGGTCTGCGACTCGAGGATGGCGTACCAGAGCTTCTGAGCCTTGACGGTGCGCTTG 420835 Query 31893 GCACGCCCCTCGGACTCGTAGCGAAGATACAGGTCCTCGTACTCCTTGCCAAAGGCATCG 31952 | ||| ||||||| ||||||||| || ||| ||| |||| | ||| || ||| Sbjct 420836 GAACGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCACCATAGCAGTCG 420895 Query 31953 GTTAGACCGGGACACTCCTTGGGGTCGAAGAGCGACCATGCGACATCGGCCTCTACTCGC 32012 | |||||||| ||||| |||||| | ||||||||| | | | ||| || | | Sbjct 420896 GCAAGACCGGGGCACTCGTTGGGGCACATGAGCGACCAGTCTCCGTTCTGCTCGACCCTC 420955 Query 32013 TTCATGAACAGGTCGTTCAGCCACATCGCGTAAAACAGATTCCTGGCGCGTTGGGTCTCC 32072 |||||||| |||||| | ||| | ||||| || || | | ||| || |||| Sbjct 420956 TTCATGAAGAGGTCGGGAACCCAGAGTGCGTAGAAGAGCTCTCGGGCACGCACCTCCTCC 421015 Query 32073 TCACCCTGGTT 32083 | ||| ||||| Sbjct 421016 TTACCGTGGTT 421026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921618966956560