Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq79 452 7e-122 seq236 311 2e-79 >seq79 Length=472637 Score = 452 bits (500), Expect = 7e-122 Identities = 1191/1792 (66%), Gaps = 77/1792 (4%) Strand=Plus/Plus Query 243874 GAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATGA 243932 || |||||| ||||| |||| || ||||| |||| || || ||||||||| ||||| Sbjct 419842 GATGTTGAGCGACTGTGACTGGCAGATGAAGG-CGCCTCGGTCGGCGGCCATGTCGATGA 419900 Query 243933 GGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACC 243992 | |||| || ||||| || | |||||||| | ||||| | | ||||| | | Sbjct 419901 TGGCCTTTTGGCTGATCTCCCACACGGTCTTGTAAAGCTTCTTGATGCGGTCGGGAATAC 419960 Query 243993 CTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCC 244052 | | ||||| | |||||| |||| |||||| || | ||| | ||||||| Sbjct 419961 CGGGCACATTCTGGATCGAGCCACCGTGGGCGATGATGCGGTTCTTCATCGTGTCGTTCC 420020 Query 244053 ACAGGCCCAAGCGCTCCA-----GCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTC 244107 |||| ||| || | || ||| | |||||| | || |||||||| ||||| Sbjct 420021 ACAGACCCT-GCTCGACAAGCTCGCGGAGCAACCAGGGG----TTAACCACCTGGAACTC 420075 Query 244108 TCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTT 244167 ||| | ||||| |||||| ||||| |||| || |||||| | || ||| || Sbjct 420076 TCCGGCGAGCACACGGCGCGAGTAGATGTTGGATGTGTACGGCTCAAAGCACTCGTTGAA 420135 Query 244168 GCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCAC 244227 ||| || ||||| ||| || || |||||||| | | |||| ||| | || Sbjct 420136 GCCGAGAATCTGACTCGTCGAGGCGGTAGGCATGGGGGCGAGGAGCAAGGAGTTGCGCAG 420195 Query 244228 GCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTC 244287 |||||| | || | ||||||| ||||||||||| | |||| || Sbjct 420196 ACCGTGCTTGGCAATCTTGGCCTTGAGCTCAGCCCAGTCCCACAGGTCCGATGGGG---- 420251 Query 244288 GCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCT-GCCCTCGT 244346 ||| |||||||||||| |||||||| |||| || | ||| ||| ||| Sbjct 420252 -----TGACACCCCACATGTCATACTGCAGCTCACCCT-GCGAAGCAGGCGAGCCGGCGT 420305 Query 244347 AGGTCGGGTAGGGACCGTCGCGCTGG-GCCAGCTTACAGCTCTCG-TCGAGGGCGGCGTA 244404 | ||| ||| | |||| || || | ||||||| || | ||| ||||| || |||| Sbjct 420306 ACGTCTCGTACGTGCCGT-GCTCTTGAGCCAGCTCGCA-CGATCGCTCGAGCGCAGCGTG 420363 Query 244405 GTAGATGGTCTCGAAGATCATCTTGTTCATGTCG-CGGGCCTTGCCGCAGGTGAAGGGGA 244463 ||| || ||||| |||||| | ||| | |||| || |||| | | ||| | | Sbjct 420364 GTAAATAGTCTCAAAGATCTGCACGTTAA-GTCGGCGAGCCTCGGGCGACTCGAACGCGT 420422 Query 244464 TGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTC 244523 |||||| ||||||||| |||| || || ||||| || ||||| |||||||||| ||| | Sbjct 420423 AGCCCATGATCATGAAGGCGTCAGCAAGACCCTGAACACCGATACCGATGGGTCGGTGGC 420482 Query 244524 GCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGA 244583 || ||||||| | ||||| |||||||| ||||| |||||| | |||||||| Sbjct 420483 GCATGTTGGATCTGCGAGCTTCCTCGACGGGGTAGTAGTTGATGTCGATGATCTTGTTGA 420542 Query 244584 GGTT---GCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTAC-TCGTAG 244639 |||| || | || | || || || | || ||| |||||||||| || | | Sbjct 420543 GGTTCTTGCAGATGGCCTTGGCAACCTTGTGG---AGACGCTTAAAGTCGTACGTCTTGG 420599 Query 244640 GGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAG 244699 || || | |||| |||| | || || | ||| |||||||| Sbjct 420600 TGA-CCGGGTCGAT------------AAACGTGGGCAGCGCAATCGAGGCAAGGTTGCAC 420646 Query 244700 ACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTG 244759 || || ||||| || | |||||| || |||||||| || ||||| ||||||| Sbjct 420647 ACAGCGACCTCGTCTGGCGCACTGTACTCGATGATCTCGGTACACAGGTTGGAGCACTTG 420706 Query 244760 ATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAG 244819 |||||||| |||| || || ||| |||| |||| || ||||||||||| ||||| Sbjct 420707 ATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGGATGAAC 420766 Query 244820 GGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACC 244879 || || |||||| ||| | |||||| | || |||||| | | ||||||||| Sbjct 420767 GGGTTACCAGTCTCGGTCTGCGACTCGAGGATGGCGTACCAGAGCTTCTGAGCCTTGACG 420826 Query 244880 GTCCTGCGAGCCTTG-CCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCC 244938 || | || | | ||||| ||||||||||| ||| ||| ||| |||||| || Sbjct 420827 GTGC-GCTTGGAACGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCACC 420885 Query 244939 CCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTC 244998 || ||| | || ||||||||| ||||||||||| ||| || ||| | Sbjct 420886 ATAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATGAGCGACCAGTCTCCGTTCTG 420945 Query 244999 CTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCT 245058 || |||||||| ||||||||||||||| | |||||| || | |||||| || | || | Sbjct 420946 CTCGACCCTCTTCATGAAGAGGTCGGGAACCCAGAGTGCGTAGAAGAGCTCTCGGGCACG 421005 Query 245059 CTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCA 245118 | ||| ||| || |||||| | || || | || || || || || |||||| Sbjct 421006 CACCTCCTCCTTACCGTGGTTCTTGCGGAGGTCGAGGAACTCGAACACATCCGAGTGCCA 421065 Query 245119 GGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCT 245178 ||||| ||||||| || | ||| ||||| ||||||||||| |||||||| | | | Sbjct 421066 AGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGA----CGT 421121 Query 245179 CTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGG 245234 ||||| |||||||| ||| || | ||||| || ||||| | ||||||| Sbjct 421122 AGCGAGCCGTGTTGTTGAAGACGCGAAGCATGGGCACGATACCGTTGCTGACACCGTTGG 421181 Query 245235 TGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGG 245294 |||| ||||| | ||| | || | || | | |||| | || | || |||| Sbjct 421182 TGCCGGCAATGTACGAGCCAGTACCTCGGATGCAGTGGATGTTGAGACCGATACCACCGG 421241 Query 245295 CGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCG 245354 | ||||||||| | ||| ||| |||||| |||||| ||||| || || ||| Sbjct 421242 CAGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATGCCATCGATCGAGTCGT 421301 Query 245355 ACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACA 245414 ||||||| ||| || || || || || |||||||| | || | | | |||||| | Sbjct 421302 CCTTCATGGTGACGAGGAAACACGACGAGAGCTGGGGGTGTGGTGTCCCGGCGTTGAAGA 421361 Query 245415 GAGTGGGGCTGGCGTGGGTAAAGTAGCGGCT-CGAGAGGAACCCGTACGTCTGGAGCAGA 245473 ||||||| |||||||||||| | | || ||| | || ||| || | || | Sbjct 421362 GAGTGGGCGAAGCGTGGGTAAAGCA-CTTCTGCGACATGAGGTTGTAGGTTTCGA-TGGC 421419 Query 245474 GC-GTCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTGGGGCGT 245532 || ||||||| | ||||||||| | |||| | |||||| |||||||||| Sbjct 421420 GCTCTCGATGTCCTGGCCGTGGATACCGACGGCGACACGCATGAGCATGTGCTGGGG--- 421476 Query 245533 CTCGATGGGTC-CCTCGGGTCCCTT------GAGCATGTAGGAGCGCTCGAGCGTCTTGA 245585 ||| | |||| ||| | || || ||| | |||||| |||||||| ||||||| Sbjct 421477 -TCGCTCGGTCACCTTG---CCGTTGATGCGGAGGAGGTAGGAACGCTCGAGAGTCTTGA 421532 Query 245586 ACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGCTGCGTCGAG 245637 | |||||| | |||| |||||| | || ||| ||| | |||||| Sbjct 421533 AGCCAAAGAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATGGCCGAGTCGAG 421584 >seq236 Length=132806 Score = 311 bits (344), Expect = 2e-79 Identities = 576/826 (70%), Gaps = 32/826 (4%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| ||||||||||||||||||||||||| Sbjct 4180 ATCTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACCGCCGAGGAGATTGACCTG 4121 Query 42360 GCCAAGGACACGGCCGGCTGGGAGT-CA--CTGTCTGAGAACGAAAAGTTTTTCCTCAAA 42416 ||||||| || ||||| || ||| | | ||||| ||| || Sbjct 4120 TCCAAGGATCTTCACGATTGGGACAACAAGCTGAATCACAACGAGCGTCACTTCATCTCC 4061 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 || | || |||||||||||||| || ||||| || ||||| |||||||| | | | Sbjct 4060 CACGTCCTCGCCTTCTTCGCCGCTTCCGACGGTATCGTCAACGAGAACCTTGTCGAGCGT 4001 Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 |||| ||||||||| | ||||| || |||||||| || |||||||| || Sbjct 4000 TTCAGCTCCGAGGTGCAGGCCGCCGAGGCTCGATGCTTCTATGGTTTCCAGATCATGATG 3941 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCC 42593 |||||| | ||| ||| ||| | ||||||| |||| ||||||| || ||| Sbjct 3940 GAGAACATCCACAGCGAGACCTACTCG---CTGCTCATCGACACCTACATCCGCGAGCCC 3884 Query 42594 GTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCG 42653 | |||| | || || | || | ||||| || ||| | ||||| ||||||| Sbjct 3883 GAGCAGCGCGAGTTCCTCTTTGACGCTGTCGAGACAATCCCCGTCGTCAAGGAGAAGGCC 3824 Query 42654 GACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCA--ACGTTCGGCGAGAGGCTGGTAG 42711 |||||||| || ||||||| || | || ||||| || |||| |||| | || || | Sbjct 3823 GACTGGGCTCTTCGCTGGATC-AGCGACC-GACGCGCTACCTTCGCCGAGCGTCTCGTTG 3766 Query 42712 CCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCA 42771 ||||| ||||||| ||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 3765 CCTTTGCCGCCGTTGAGGGCATCTTCTTCTCTGGCTCCTTCGCCTCCATCTTCTGGCTCA 3706 Query 42772 AGCAGAAGGTGTCG-ATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAG 42830 || || | ||| |||||||| ||||||||||| |||||||||||| | |||||| Sbjct 3705 AGAAGCGTG-GTCTTATGCCCGGTCTCACCTTCTCCAACGAACTCATCTCGCGTGACGAG 3647 Query 42831 GGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCA-----GGCACAAGC 42885 || || || | |||||||| |||||||| ||| |||||||||| || || | Sbjct 3646 GGTCTCCACACCGACTTTGCTTGCCTCCTCTTC---AGCCACCTCAAGAAGCGCGCACAC 3590 Query 42886 CCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCC 42945 ||| || | || | | | |||||||| || || || |||||||||| || ||| Sbjct 3589 CCT-GA--CACCGTGCTCAAG--ATCATCACCGAAGCGGTTGAGATCGAGACTGAATTCG 3535 Query 42946 TCACGCAGTCGCTGCCCGTGT-CCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTAC 43004 || |||| | |||||| | || |||| |||||| | | ||| ||||| Sbjct 3534 TCTGCGAGTC-CATTCCGTGTGCACTCATCGGAATGAACGCCACTTTGATGACGCAGTAC 3476 Query 43005 ATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTC-AGCCGCCTCTACAACAC 43063 || | ||||| || || | | | || ||| | || | |||||| | ||||| Sbjct 3475 ATTCGCTACGTGGCTGATCGTTTGCTTTGCAGTCTTGGAAACGAGCCGCAT-TACAATGT 3417 Query 43064 GCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAG 43109 | || ||||||||| || ||||| ||||| || ||| | || ||| Sbjct 3416 GTCGAACCCCTTCGATTTCATGGAAAACATTTCCTTGCAAGGAAAG 3371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944335682336480