Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq79 178 2e-39 seq236 127 2e-24 seq288 120 4e-22 >seq79 Length=472637 Score = 178 bits (196), Expect = 2e-39 Identities = 885/1391 (64%), Gaps = 25/1391 (2%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| |||| ||||| |||||||||||||| ||| || | || || || ||| Sbjct 420098 TAGATGTTGGATGTGTACGGCTCAAAGCACTCGTTGAAGCCGAGAATCTGACTCGTCGAG 420157 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || || |||||||| || | ||| | | ||| || ||||| | | ||| || Sbjct 420158 GCGGTAGGCATGGGGGCGAGGAGCAAGGAGTTGCGCAGACCGTGCTTGGCAATCTTGGCC 420217 Query 114062 TTGAGGGCGTCCCAGTCGTA--GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGA 114119 ||||| | ||||||| | | | | | | | || |||||| ||| |||| | Sbjct 420218 TTGAGCTCAGCCCAGTCCCACAGGTCCGATGGGGTGACACC--CCACATGTCATACTGCA 420275 Query 114120 GGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCA 114179 | ||| || || || ||||| || | | |||||||| | ||| | | | |||| Sbjct 420276 GCTCACCCTGCGAAGCAGGCGAGCCGGCGTACGTCTCGTACGTGCCGTGCTCTTGAGCCA 420335 Query 114180 ATTCGGA-GCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATT 114238 ||| | | |||| ||||| || ||||| || || |||||||| || | | || | | Sbjct 420336 GCTCGCACGATCGC-TCGAGCGCAGCGTGGTAAATAGTCTCAAAGATCTGCACGTTAAGT 420394 Query 114239 GCCTTGGCCTCGTCGGAATCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGAC 114296 |||||| || || |||||| || | || | || || | || || |||| Sbjct 420395 CGGCGAGCCTCGGGCGACTCGAACGCGTAGCC--CATGATCATGAAGGCGTCAGCAAGAC 420452 Query 114297 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGG 114356 | || ||||||| || || || || || | ||| || || | ||||| ||| |||| Sbjct 420453 CCTGAACACCGATACCGATGGGTCGGTGGCGCATGTTGGATCTGCGAGCTTCCTCGACGG 420512 Query 114357 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT 114416 | || | || | ||||| | | | || || || ||| || |||| | | | | Sbjct 420513 GGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTCTTGCAGATGGCCTTGGCAACCTTGT 420572 Query 114417 GAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTG 114476 | || | | || | | || | | || | || | || || || || | Sbjct 420573 GGAGACGCTTAAAGTCGTACGTCTTGGTGACCGGGTCGATAAACGTGGGCAGCGCAATCG 420632 Query 114477 ACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACA 114536 | || || || ||||||| | ||| || || ||||||| || || || ||||||| Sbjct 420633 AGGCAAGGTTGCACACAGCGACCTCGTCTGGCGCACTGTACTCGATGATCTCGGTACACA 420692 Query 114537 AATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCT 114596 || || | ||| |||||||| | |||||| || || ||| ||| ||||||| Sbjct 420693 GGTTGGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCT 420752 Query 114597 TGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CA 114655 |||| || ||| | || | || ||||| || || |||| ||| || || | ||||| | Sbjct 420753 TGTAGAGGATGAACGGGTTACCAGTCTCGGTCTGCGACTCGAGGATGGCGTACCAGAGCT 420812 Query 114656 TCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCT 114715 || | | || | || ||| |||| || ||||| ||||||| ||||||| Sbjct 420813 TCTGAGCCTTG-ACGGTGCGCTTGGAACGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGC 420871 Query 114716 TCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGAC 114775 |||||||| ||||| | || | || || || || | ||||| | ||| ||| Sbjct 420872 TCAAACTCGTCACCATAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATGAGCGAC 420931 Query 114776 CATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAG 114835 || | || || ||| || | ||||||||||||||| || | |||||| || ||||| Sbjct 420932 CAGTCTCCGTTCTGCTCGACCCTCTTCATGAAGAGGTCGGGAACCCAGAGTGCGTAGAAG 420991 Query 114836 AGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATG 114895 || || || || | || || | || || || || | || | || || | Sbjct 420992 AGCTCTCGGGCACGCACCTCCTCCTTACCGTGGTTCTTGCGGAGGTCGAGGAACTCGAAC 421051 Query 114896 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCC 114952 | ||||| |||||| || || | ||| | || | | || ||| ||| || Sbjct 421052 ACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCC 421111 Query 114953 TGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCAT--CAG 115010 |||| || || | || ||| || || ||||||||||| || | |||||| | | | Sbjct 421112 TGGTCGACGTAGCGAGCCGTGTTGTTGAAGACGCGAAGCATGGGCACGATACCGTTGCTG 421171 Query 115011 ATTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGGCTCTGACATCATGGATGTGCAT 115068 | || || || || || |||||| | | | ||| || ||||||| | Sbjct 421172 A--CACCGTTGGTGCCGGCAATGTACGAGCC--AGTACCTCGGATGCAGTGGATGTTGAG 421227 Query 115069 ACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCC 115128 ||| ||||| || || ||| ||||| || || | |||| || ||||||| || Sbjct 421228 ACCGATACCACCGGCAGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTCGTAGATGCC 421287 Query 115129 GTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGT 115188 ||||||||||| |||| | | || ||||| || ||| | || || |||||| Sbjct 421288 ATCGATCGAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTGGGGGTGTGGTGT 421347 Query 115189 ACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAA-CATACCTTGGGACATCTTATCGT 115247 || ||||||||||| || || | |||||| | || || | || ||||| | || Sbjct 421348 CCCGGCGTTGAAGAGAGTGGGCGAAGCGTGGGTAAAGCACTTC-TGCGACATGAGGTTGT 421406 Query 115248 AGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACA 115307 |||| || | | || ||||| | ||||| ||||||| | ||| ||||| | || Sbjct 421407 AGGTTTCGATGGCGCTCTCGATGTCCTGGCCGTGGATACCGACGGCGACACGCATGAGCA 421466 Query 115308 TGTATTGGGGT 115318 ||| |||||| Sbjct 421467 TGTGCTGGGGT 421477 >seq236 Length=132806 Score = 127 bits (140), Expect = 2e-24 Identities = 129/167 (77%), Gaps = 1/167 (1%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || |||||||||||||||||| ||||||||||| || |||||| || || Sbjct 3627 GCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGTTCGTTGGAGAAGGTGAGACCG 3686 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| ||||| |||||||| | |||||| || | || || || ||||||||||| Sbjct 3687 GGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCAGAGAAGAAGATG 3746 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG-AGCGCG 126212 ||||| || || || |||| ||||||||| || |||| |||||| Sbjct 3747 CCCTCAACGGCGGCAAAGGCAACGAGACGCTCGGCGAAGGTAGCGCG 3793 >seq288 Length=590259 Score = 120 bits (132), Expect = 4e-22 Identities = 259/382 (68%), Gaps = 8/382 (2%) Strand=Plus/Plus Query 172576 CTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTCAGGATGAGACCCTTAATGTGTGA 172635 |||||| || || || |||||| || || | ||| | |||||||||||| || || || Sbjct 298435 CTTGAGCAGCGACGGATAGAAGTGGTCGAGGAAATTGATGATGAGACCCTTGATATGAGA 298494 Query 172636 ACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCG-AAGCTCGGAAACAT 172694 |||||||| |||| ||| ||||| ||||| | | || || || ||||| | || | Sbjct 298495 ACCATCGTGATCCTGATCGGTCATGATCATGATACTTCCGTAACGCAAGCT-GTTGACGT 298553 Query 172695 CTTGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGT 172754 | |||| | ||| || ||||| ||||| | |||| ||||| | |||| || | Sbjct 298554 CAAGATATTGCTTGCCGTGTTGCAGACCAAGAATCTCCTTGATGGCCTTGATTTCGGCAT 298613 Query 172755 TTGATGTGAGTTGCGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGA 172814 | ||| ||| | || || |||||||| || | ||| || || || |||| Sbjct 298614 TCTTCATGATTTGGTCGTGAGAGGCCTCGCGGACGTTGAGAAGCTTACCTCGAAGCGGGA 298673 Query 172815 ACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGG 172874 | |||||||||| || | || || | || ||| | || ||||| | ||| || | Sbjct 298674 AAACACCGTAGTTGTCTCTTCCTACTTCGACAATACCGGACACGGCGAGAGACTTGGCTG 298733 Query 172875 AATCACCCTCCGTCACGATGAGCGTACA---CTTTCCAGATTGTGCCGTCCCCGCCTTGT 172931 | ||||| || || | |||||| ||||| |||| | | |||| || || |||| Sbjct 298734 AGTCACCTTCGGTGAGGATGAGGGTACAGTCCTTTGC-TTTCCTGCC--ACCAGCATTGT 298790 Query 172932 TCGCATCGTCCAACTTGGGAAT 172953 | || || |||| ||||||||| Sbjct 298791 TGGCGTCCTCCAGCTTGGGAAT 298812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597351374857840