Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1 114 1e-20 seq226 95.1 1e-14 seq247 87.8 2e-12 >seq1 Length=1882320 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | || || || || | || ||||| || ||||||||||| || | Sbjct 161270 ACCGCCACGAAGACGGAGAACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGA 161329 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| ||||||| ||||||||||||||| | ||||| ||||||||||| || || Sbjct 161330 AAGGGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGG 161389 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || || || || || ||| || || | || || | || || Sbjct 161390 GATTCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCAATGGTGTCCGAAGACTCGAC 161449 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | |||||| || ||||| || || || || |||||||| Sbjct 161450 TTCGAGGGTAATGGTCTTACCTGTCAAGGTCTTGACAAAGATTTGCAT 161497 Score = 82.4 bits (90), Expect = 8e-11 Identities = 162/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| || || | || || || || || |||||||| || | Sbjct 79440 ACCACCACGCAGACGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 79381 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| |||| || |||||||| ||||| | || || ||||||||||| || || Sbjct 79380 AAGGGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGG 79321 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || || || || || ||| || || | || || | ||||| Sbjct 79320 GATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCAC 79261 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAATAATGAT 64455 || | || | |||||| || || | || || || || || ||||| || || | ||| Sbjct 79260 CTCAAGGGTGATGGTCTTACCCGTAAGGGTCTTCACAAAGATCTGCATGTTGATCACGAT 79201 >seq226 Length=271753 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| || | || ||||| | ||| || || || || || ||||| || | Sbjct 170617 ACCACCGCGCAGTCGCAAAACGAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCAGA 170558 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | || || || ||||| ||||| ||||||| ||||||||||| ||||| Sbjct 170557 CAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATGAGACGCTGCTGGTCAGGAGG 170498 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||| || || || ||||| | | || ||||| ||| || | ||||| || || | Sbjct 170497 AATACCCTCCTTATCTTGGA-TCTTGGCTTTGACATTGTCAATAGTATCCGAGGACTCGA 170439 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | ||||| || || | || || || || || ||||| Sbjct 170438 CCTCGAGTGTGATCGTCTTACCAGTAAGGGTCTTGACAAAGATCTGCAT 170390 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || ||||||||||| || | || ||||| | || || |||||||| || ||| | Sbjct 171264 TCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGGCCATCCTCGAGCTGCTTTCCTGCAAAG 171205 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 ||||| || |||||||| || ||||| ||||| || || || || || ||| ||| Sbjct 171204 ATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGAATCTTGGCCTTGACATTG 171145 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || || | || || || | ||| | ||||||||| ||||| || || || Sbjct 171144 TCAATGGTGTCTGAAGACTCGACCTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTGACA 171085 Query 64433 AAAATTTGCAT 64443 || || ||||| Sbjct 171084 AAGATCTGCAT 171074 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || || || || || ||||||||||| | || ||| || | || Sbjct 170146 AAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTTCGGCCATC 170087 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | |||||| || ||| | || || ||||||||||| || ||||| || || || || Sbjct 170086 TTCCAACTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTGTC 170027 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || || | || || | ||||| || | || | ||| Sbjct 170026 CTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGT 169967 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| ||||||| ||| || || || || ||||| Sbjct 169966 CTTACCGGTCAGAGTCTTGACAAAGATCTGCAT 169934 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| || | || ||||| | ||| || || || || ||||||||||| | Sbjct 171073 ACCACCGCGCAGTCGCAAAACGAGATGGAGCGTAGACTCCTTCTGGATGTTGTAATCCGA 171014 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || |||| || |||||||| || || ||||||| || |||||||| ||||| Sbjct 171013 AAGCGTCCGTCCGTCCTCGAGCTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCAGGAGG 170954 Query 64336 AATTCCTTCTTTTTCTTGTATTTT 64359 ||| || || || || || || || Sbjct 170953 AATACCCTCCTTGTCCTGAATCTT 170930 >seq247 Length=126104 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | || |||||| |||| || |||||||| ||| Sbjct 71164 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTACCG 71105 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 || | || || |||||||||||||| ||||| || || || || || || || Sbjct 71104 GCGAAGATCAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTATCCTGAATCTT 71052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499642938823120