Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq79 383 2e-101 >seq79 Length=472637 Score = 383 bits (424), Expect = 2e-101 Identities = 1131/1720 (66%), Gaps = 50/1720 (3%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | | ||||| |||||| ||||| ||| || ||||||||| || | |||| | Sbjct 421548 TACAACTTCTTTGGCTTCAAGACTCTCGAGCGTTCCTACCTCCTCCGCATCAACGGCAAG 421489 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || |||||||||| || || |||| ||||| |||||| |||| || |||||||| ||| Sbjct 421488 GTGACCGAGCGACCCCAGCACATGCTCATGCGTGTCGCCGTCGGTATCCACGGCCAGGAC 421429 Query 93838 ATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACC 93897 || || | | | | || |||| | | ||| | | |||| || | Sbjct 421428 ATCGAGAGCGCCATCGAAACCTACAACCTCATGTCGCAGAAGTGCTTTACCCACGCTTCG 421369 Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACG 93957 || || || |||||||| ||||| || || ||| | || ||||||||||| | || Sbjct 421368 CCCACTCTCTTCAACGCCGGGACACCACACCCCCAGCTCTCGTCGTGTTTCCTCGTCACC 421309 Query 93958 AACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCA 94017 | |||| |||||| ||| || || | ||||| ||||||| |||||| | ||||| Sbjct 421308 ATGAAGGACGACTCGATCGATGGCATCTACGACACCCTCAAGACCTGTGCCATGATCTCC 421249 Query 94018 AAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATC 94077 || || || || ||||| ||| ||||| | | || | | || || ||||| Sbjct 421248 AAGACTGCCGGTGGTATCGGTCTCAACATCCACTGCATCCGAGGTACTGGCTCGTACATT 421189 Query 94078 CGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCG 94137 ||| ||||| || | |||||| |||| || ||||| || |||||||||||| || Sbjct 421188 GCCGGCACCAACGGTGTCAGCAACGGTATCGTGCCCATGCTTCGCGTCTTCAACAACACG 421129 Query 94138 GCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAG 94197 || |||||||| ||||||||||| | | | ||| | || || |||| | ||| Sbjct 421128 GCTCGCTACGTCGACCAGGGTGGCAACAAGCGTCCCGGTGCCTTTGCCATCTACATTGAG 421069 Query 94198 CCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTG 94257 || |||||| |||| ||| | ||| ||||||| || ||||||||||| || || | Sbjct 421068 CCTTGGCACTCGGATGTGTTCGAGTTCCTCGACCTCCGCAAGAACCACGGTAAGGAGGAG 421009 Query 94258 GAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTC 94317 | | | ||| |||| ||||||||||| |||||||| || ||||| || ||||| | ||| Sbjct 421008 GTGCGTGCCCGAGAGCTCTTCTACGCACTCTGGGTTCCCGACCTCTTCATGAAGAGGGTC 420949 Query 94318 GAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTT 94377 ||| | ||| | |||| || | || ||||| || || ||||| || ||||| Sbjct 420948 GAGCAGAACGGAGACTGGTCGCTCATGTGCCCCAACGAGTGCCCCGGTCTTGCCGACTGC 420889 Query 94378 TGTGGATCGCG-TTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCA---G 94433 | ||| | || ||||| | | || | || ||||| | |||| ||| | Sbjct 420888 TATGG-TGACGAGTTTGAGCGCCTCTACGAGCGCTACGAGGCCGAGGGTCGTTCCAAGCG 420830 Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493 | || | | ||| |||||| ||| | ||| | || ||| ||||| || Sbjct 420829 CACCGTCA---AGGCTCAGAAGCTCTGGTACGCCATCCTCGAGTCGCAGACCGAGACTGG 420773 Query 94494 TACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553 || || | |||| | | |||||| ||| |||| |||| ||||||| || ||||||| Sbjct 420772 TAACCCGTTCATCCTCTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGG 420713 Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGAT 94613 |||||| |||| || ||||| |||||||| ||||||| | | | || |||||| | Sbjct 420712 CACCATCAAGTGCTCCAACCTGTGTACCGAGATCATCGAGTACAGTGCGCCAGACGAGGT 420653 Query 94614 TGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCAC---TTTCGTGCGAGATGCCTACAC 94670 |||||||| ||||| | ||| || ||| |||| | ||| | | || | || Sbjct 420652 CGCTGTGTGCAACCTTGCCTCGATTGCGCTGCCCACGTTTATCGACCCGGTCACCAAGAC 420593 Query 94671 GTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTGAA 94730 | ||| ||| || ||| | || ||| || || || | ||| Sbjct 420592 G--TACGACTTTAAGCG-TCTCCACAAGGTTGCCAA------GG---CCATCTGCAAGAA 420545 Query 94731 CCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGG--CGGAGAACTCAAAC 94788 ||| |||| | | ||||||| |||| |||||||||| ||| | || ||| || ||| Sbjct 420544 CCTCAACAAGATCATCGACATCAACTACTACCCCGTCGAGGAAGCTCGCAGA--TCCAAC 420487 Query 94789 CTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATG 94848 || || || |||||||| ||||| || |||||| | || ||||| | |||| ||| Sbjct 420486 ATGCGCCACCGACCCATCGGTATCGGTGTTCAGGGTCTTGCTGACGCCTTCATGATCATG 420427 Query 94849 CGTCTGC-CCTACGACTCTGTCGACGC-GGCGGGTTTGAATTTGAACATATTCGAAAGCA 94906 | || | | | ||| || ||| || || | || || || | || || || | | Sbjct 420426 -GGCTACGCGTTCGAGTCGCCCGAGGCTCGCCGACTT-AACGTGCAGATCTTTGAGACTA 420369 Query 94907 TTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACG 94966 |||| ||| || | | | ||| | | |||| | | ||||| | ||| Sbjct 420368 TTTACCACGCTGCGCTCGAGCGATCGTGCGAGCTGGCTCAAGAGCACGGC---ACGTACG 420312 Query 94967 AATCGTTCCGCGGATCGCC--CTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGT 95024 | ||| | ||| ||||| ||| | ||||| | |||| ||| | |||||||| Sbjct 420311 AGACGTACGCCGGCTCGCCTGCTTCG--CAGGGTGAGCTGCAGTATGACATGTGGGGTGT 420254 Query 95025 GAAGCCCTCGGGTCTGTACGACTGGG--AAGCTCTACGCGCTGATGTTATCAAACACGGT 95082 | || |||| |||| ||||||| ||||| | || || || ||| |||||| Sbjct 420253 CACCCCATCGGACCTGTGGGACTGGGCTGAGCTCAAGGCCAAGA--TTGCCAAGCACGGT 420196 Query 95083 GTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGC 95142 || ||| | |||| | ||||||||||| || ||||| ||| ||||| || ||| Sbjct 420195 CTGCGCAACTCCTTGCTCCTCGCCCCCATGCCTACCGCCTCGACGAGTCAGATTCTCGGC 420136 Query 95143 AACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGG 95202 |||||||| || || || | ||| |||||| | ||| | || ||||||||||| Sbjct 420135 TTCAACGAGTGCTTTGAGCCGTACACATCCAACATCTACTCGCGCCGTGTGCTCGCCGGA 420076 Query 95203 GAATTCCCCGTCATCAACAAGCACCTCCTACGGGA-CCTGACGTCTCTGGGTGTGTGGGG 95261 || |||| || | ||| | || || || | || || | |||| ||||| Sbjct 420075 GAGTTCCAGGTGGTTAACCCCTGGTTGCTCCGCGAGCTTGTCG-AGCAGGGTCTGTGGAA 420017 Query 95262 TGACAAGGTCAAGAACCAACTGCTACGCGCCAAC---GGCTCCGTCCAGAACATCCCGCA 95318 |||| | | ||||||| | | |||| || ||||| ||||||| | || Sbjct 420016 CGACACGATGAAGAACCGCATCAT---CGCCCACGGTGGCTCGATCCAGAATGTGCCCGG 419960 Query 95319 AATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGAT 95378 || || || ||||||| ||| ||||||||||||||||||||| || | || Sbjct 419959 TATTCCCGACCGCATCAAGAAGCTTTACAAGACCGTGTGGGAGATCAGCCAAAAGGCCAT 419900 Query 95379 ACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAG 95418 ||||| || |||| ||| || |||||||||||||| Sbjct 419899 CATCGACATGGCCGCCGACCGAGGCGCCTTCATCTGCCAG 419860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494721357156080