Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq79 221 1e-52 seq226 111 2e-19 seq1 96.9 3e-15 >seq79 Length=472637 Score = 221 bits (244), Expect = 1e-52 Identities = 1067/1653 (65%), Gaps = 73/1653 (4%) Strand=Plus/Plus Query 152838 ATGAAAGCGTTACGGTCGGCCGCCATCTCAATCATG-CGTTTTGCCTTCATCTCCCAGGC 152896 ||||| ||| |||||||| ||||| || || ||| | ||||| || |||||||| | Sbjct 419867 ATGAAGGCGCCTCGGTCGGCGGCCATGTCGATGATGGCCTTTTGGCTG-ATCTCCCACAC 419925 Query 152897 GGTTTTGTACAAATTTTTAACGCTATCCGGTATACCTTCAATGTTCTGAATAGAGCCCTT 152956 ||| ||||| | || || | || || || ||||| | ||||| || ||||| Sbjct 419926 GGTCTTGTAAAGCTTCTTGATGCGGTCGGGAATACCGGGCACATTCTGGATCGAGCCACC 419985 Query 152957 GTGTGCAAAAATAGCGTTTCGTATTTCGGGCGTGT-ACACGTTCAGTTTAATGAGGTCAT 153015 ||| || | || ||| ||| | | | ||| ||| | | | | || || Sbjct 419986 GTGGGCGATGAT-GCGGTTCTTCATCGTGTCGTTCCACAGACCCTGCTCGACAAGCTCGC 420044 Query 153016 CGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACAT 153075 || ||| | |||| ||||| || ||||| || || | ||| || | | | || | | Sbjct 420045 GGAGCAACCAGGGGTTAACCACCTGGAACTCTCCGGCGAGCACACGGCGCGAGTAGATGT 420104 Query 153076 TGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCG 153135 || ||| | || |||||| | ||||| ||| || || ||| ||| | ||||| | Sbjct 420105 TGGATGTGTACGGCTCAAAGCACTCGTTGAAGCCGAGAATCTGACTCGTCGAGGCGGTAG 420164 Query 153136 GCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACG 153195 ||||| || | | ||| || || |||| |||||| ||| | | |||| | | Sbjct 420165 GCATGGGGGCGAGGAGCAAGGAGTTGCGCAGACCGTGCTTGGCAATCTTGGCCTTGAGCT 420224 Query 153196 CCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTC 153255 | ||| |||||||| |||| || || | ||||||||| ||||| | | | || Sbjct 420225 CAGCCCAGTCCCACAGGTCCGATGGGGTGACACCCCACATGTCATACTGCAGCTCACCCT 420284 Query 153256 GACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGC 153315 | || || |||||| |||| ||| |||||| ||| ||||| ||||| | Sbjct 420285 GCGAAGCAGGCGAGCCGGCGTACGTCTCGTACGTGCCGTGCTCTTGAGCCAGCTCGCA-C 420343 Query 153316 TAGC-CTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCC-GC 153373 | | ||||||||| | | ||| || || || ||| || || || |||| || Sbjct 420344 GATCGCTCGAGCGCAGCGTGGTAAATAGTCTCAAAGATCTGCACGTTAAGT-CGGCGAGC 420402 Query 153374 TTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACC 153433 || |||| ||| || || | || |||||||| || |||||||| | ||| Sbjct 420403 CTCGGGCGACTCGAACGCGTAGCCCATGATCATGAAGGCGTCAGCAAGACCCTGAACACC 420462 Query 153434 GACGCCGATGGGTCGATGCTTCTCGTTG---CTGCG--CCTCGCGCTCGCTATGGGATAG 153488 || ||||||||||| || | |||| ||||| | || |||| | ||| ||| Sbjct 420463 GATACCGATGGGTCGGTGGCGCATGTTGGATCTGCGAGCTTC---CTCG--ACGGGGTAG 420517 Query 153489 TGATTGCGATCGATAATTTTGTTGAGGTTGC-GCACCACCACTTTAGTTATCGCCTTAAG 153547 | ||| ||||| || ||||||||||| ||| | | || | | | | || Sbjct 420518 TAGTTGATGTCGATGATCTTGTTGAGGTTCTTGCAG-ATGGCCTTGGCAACCTTGTGGAG 420576 Query 153548 TTTCTCGAAATCATAGGTCATTTCGTCGACGCGTACGCATCGATTCACG--------GCA 153599 || || || || ||| || || ||| || ||||| ||| ||| Sbjct 420577 ACGCTTAAAGTCGTACGTC--TTGGT-GAC-----CGGGTCGATAAACGTGGGCAGCGCA 420628 Query 153600 ATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATCTCGGC 153658 || || || || || || || || ||| || |||| | ||||||| | |||||||| Sbjct 420629 ATCGAGGCAAGGTTGCACACAGCGACCTCGTCTGGCG-CACTGTACTCGATGATCTCGGT 420687 Query 153659 GCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGC 153718 || |||||| ||| || ||| ||| | || | ||| ||||| ||||| ||| || Sbjct 420688 ACACAGGTTGGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGC 420747 Query 153719 GTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATG 153778 || ||| |||| ||| |||| || |||||| |||| |||| ||| | || Sbjct 420748 ATCCTTGTAGAGGATGAACGGGTTACCAGTCTCGGTCTGCGACTCGAGGATGG-CGTACC 420806 Query 153779 C-AGGTCCTGCGCTCGCACCCGCTGCCGATAG--CGGCCCTCGCTCTCGTATCGCTCGTA 153835 || | ||| || || | ||| | | || |||||| |||||| |||||||| Sbjct 420807 AGAGCTTCTGAGCCTTGAC--GGTGCGCTTGGAACGACCCTCGGCCTCGTAGCGCTCGTA 420864 Query 153836 CAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACAT 153895 || |||||||||||||| || ||||||||||| || ||||| |||| | || ||||| Sbjct 420865 GAGGCGCTCAAACTCGTCACCATAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACAT 420924 Query 153896 CAGCGACCACATATCG-TCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCG 153954 |||||||| || || || | ||| | |||||| || || || |||||||| | Sbjct 420925 GAGCGACCAGTCTCCGTTCTGC-TCGACCCTCTTCATGAAGAGGTCGGGAACCCAGAGTG 420983 Query 153955 CGTACATGAGGTCGCGCGCCTTGCA-ATCCTCCGCGCCCATGTTGCGTTTC--AGATTGA 154011 |||| | ||| || || | | ||| |||||| || ||| || | || | || Sbjct 420984 CGTAGAAGAGCTCTCG-GGCACGCACCTCCTCCTTACCGTGGTT--CTTGCGGAGGTCGA 421040 Query 154012 -GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC 154070 | || | | | | || | |||||| || |||||||||| ||| | |||||| |||| Sbjct 421041 GGAACTCGA-ACACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCGGGACGC 421099 Query 154071 ---TTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCC 154127 || || ||||| ||||||| ||| || | |||||||||||||| | |||||| | Sbjct 421100 TTGTTGCCACCCTGGTCGACGTAGCGAGCCGTGTTGTTGAAGACGCGAAGCATGGGCACG 421159 Query 154128 AGGCCGCTTGC-GGTGCCGTTGGT---CGAATTGATCTTGC---TGCCGCGGGCGCGCAC 154180 | ||| |||| | |||||||| | | || | || | || ||| ||| Sbjct 421160 ATACCG-TTGCTGACACCGTTGGTGCCGGCAATGTACGAGCCAGTACCTCGG--ATGCAG 421216 Query 154181 TTGATGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAG 154240 | ||| ||| | || || || ||| | ||| || || || ||| || Sbjct 421217 TGGAT----GTTGAGACCGATACCACCGGCAGTCTTGGAGATCATGGCACAGGTCTTGAG 421272 Query 154241 CGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACAT 154300 || ||||||||| ||||| ||||| | | || | ||||||||| | | Sbjct 421273 GGTGTCGTAGATGCCATCGATCGAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAG 421332 Query 154301 TTGCGGAATGCGCGTTCCCGCCG-AAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTT 154359 || || || | ||||| || ||||| ||||| ||||| ||||| || | Sbjct 421333 CTG-GGGGTGTGGTGTCCCGGCGTTGAAGAGAGTGGGCGAAGCGTGGGTAAAGCACTTCT 421391 Query 154360 GGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCG 154419 | ||| | | ||| |||||||||||| ||||| || | |||||| || |||| | Sbjct 421392 GCGACATGAGGTTGTAGGTTTCGATGGCGCTCTCGATGTCCTGGCCGTGGATACCGACGG 421451 Query 154420 CGACGCGCATGAGCATGTGCTGCGGACGTTCGG 154452 |||| ||||||||||||||||| || || |||| Sbjct 421452 CGACACGCATGAGCATGTGCTGGGGTCGCTCGG 421484 >seq226 Length=271753 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||||||| | ||| | | |||||||| || || |||||||| | Sbjct 170616 CCACCGCGCAGTCGCAAAACGAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCAGAC 170557 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||||| || |||| | || |||||||| ||||| ||||| Sbjct 170556 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATGAGACGCTGCTGGTCAGGAGGA 170497 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || || || ||| || ||| | |||| || | || || | ||||| || Sbjct 170496 ATACCCTCCTTATCTTGGATCTTGGCTTTGACATTG-TCAATAGTATCCGAGGACTCGAC 170438 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | ||| |||||||| || || || ||||| |||||||| Sbjct 170437 CTCGAGTGTGATCGTCTTACCAGTAAGGGTCTTGACAAAGATCTGCAT 170390 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||| || | || || || || | || ||||| | | Sbjct 170127 GACTCCTTCTGGATGTTGTAATCCGAGAGGGTTCGGCCATCTTCCAACTGCTTACCAGCA 170068 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || ||||| || ||||| ||| || || | Sbjct 170067 AAGATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACG 170008 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||||||||||| || | || ||||| |||||||| || Sbjct 170007 TTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCGGTCAGAGTCTTG 169948 Query 138601 ACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 169947 ACAAAGATCTGCATG 169933 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| |||||||||||||| | || || |||||||| || || || | | | Sbjct 171265 CTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGGCCATCCTCGAGCTGCTTTCCTGCAAA 171206 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAAT 138540 ||| ||||| || ||||| || || |||||||| ||||| ||| | || | || || Sbjct 171205 GATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTTGTC-CTGAATCTTGGCCTTGACAT 171147 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | |||||| | ||||| ||||| | || | || || ||||||| || || Sbjct 171146 TG-TCAATGGTGTCTGAAGACTCGACCTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTG 171088 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 171087 ACAAAGATCTGCAT 171074 >seq1 Length=1882320 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || | || | | | |||||||| || ||||||||||| Sbjct 79439 CCACCACGCAGACGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 79380 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || ||||||| |||| || ||||| ||||| || || Sbjct 79379 AGGGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGGGGG 79320 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||| | ||||||||| Sbjct 79319 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACC 79260 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || ||||| || || || || ||||| ||||||||| Sbjct 79259 TCAAGGGTGATGGTCTTACCCGTAAGGGTCTTCACAAAGATCTGCATG 79212 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | ||| | || | | || ||||| ||||||||||||||| Sbjct 161271 CCGCCACGAAGACGGAGAACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGAA 161330 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || || || || |||| | |||| || ||||| ||||| || || Sbjct 161331 AGGGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGG 161390 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || | ||| || | |||||| | ||||| | Sbjct 161391 ATTCCCTCCTTGTC-CTGAATCTTGGCCTTGACGTTG-TCAATGGTGTCCGAAGACTCGA 161448 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | |||| || | || ||||| |||| || || ||||| || ||||| Sbjct 161449 CTTCGAGGGTAATGGTCTTACCTGTCAAGGTCTTGACAAAGATTTGCAT 161497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260551422560