Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq226 107 2e-18 seq1 105 6e-18 seq79 89.7 5e-13 >seq226 Length=271753 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||||| || | ||| | ||||||||| || || || |||||||| Sbjct 171072 CCACCGCGCAGTCGCAAAACGAGATGGAGCGTAGACTCCTTCTGGATGTTGTAATCCGAA 171013 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || || || ||||| ||||| ||| | || | || ||||| || ||||| Sbjct 171012 AGCGTCCGTCCGTCCTCGAGCTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCAGGAGGA 170953 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| || || ||||| | || | ||||| | | ||| || Sbjct 170952 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCGGAAGACTCAACC 170893 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || ||||| || || || || ||||| |||||||| Sbjct 170892 TCGAGCGTGATTGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 170846 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || |||||||| | || || ||| || | ||| || ||| Sbjct 170130 GTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTTCGGCCATCTTCCAACTGCTTACCA 170071 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | |||||||| || || || || |||||||||||| ||| || |||| Sbjct 170070 GCAAAGATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTG 170011 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | ||||| | | |||||| | | ||| || |||| ||| | || || ||||||||||| Sbjct 170010 ACGTTGT-CAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCGGTCAGAGT 169952 Query 127096 TTTTACAAAAATCTGCATG 127114 || ||||| ||||||||| Sbjct 169951 CTTGACAAAGATCTGCATG 169933 >seq1 Length=1882320 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || | ||| | || | || ||||| || || || ||||| || Sbjct 79442 GCACCACCACGCAGACGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCC 79383 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | |||||| || || ||||| || || ||| |||| | ||||||||| || || Sbjct 79382 GAAAGGGTGCGACCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCAGGG 79323 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTC 127062 || || |||||||||||| ||| || ||||| |||| |||| |||||||| | ||| Sbjct 79322 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG-TCGATGGTGTCCGAAGACTC 79264 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || | ||| | || || || || || || || ||||| ||||||||| Sbjct 79263 CACCTCAAGGGTGATGGTCTTACCCGTAAGGGTCTTCACAAAGATCTGCATG 79212 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || ||||| ||||| ||| | ||||| || || ||||| || || Sbjct 161301 GTGGATTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCCAGCTGCTTGCCG 161360 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||||||| || || || || |||||||||||| || || |||| Sbjct 161361 GCAAAGATGAGTCGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTG 161420 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | |||||||| | ||||||||||| ||| | || || || |||| || Sbjct 161421 ACGTTG-TCAATGGTGTCCGAAGACTCGACTTCGAGGGTAATGGTCTTACCTGTCAAGGT 161479 Query 127096 TTTTACAAAAATCTGCAT 127113 || ||||| || ||||| Sbjct 161480 CTTGACAAAGATTTGCAT 161497 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 126981 AGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTT 127040 |||| | ||||||||| || || || || |||||||||||| || || ||||| | Sbjct 161593 AGATGAGTCGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTGACAT 161652 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 |||| |||||||| |||||| |||| || | || |||||||| || || |||| Sbjct 161653 TGTCGATGGTGTCCGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTTA 161712 Query 127101 CAAAAATCTGCAT 127113 |||| |||||||| Sbjct 161713 CAAAGATCTGCAT 161725 >seq79 Length=472637 Score = 89.7 bits (98), Expect = 5e-13 Identities = 116/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 146063 GGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACG 146122 |||| |||||||| ||||| |||||||| || || | | || | |||| ||| ||| Sbjct 420057 GGTTAACCACCTGGAACTCTCCGGCGAGCACACGGCGCGAGTAGATGTTGGATGTGTACG 420116 Query 146123 GCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCA 146182 |||| || |||||||| ||||| ||||| ||||| |||||||||||| || | Sbjct 420117 GCTCAAAGCACTCGTTGAAGCCGAGAATCTGACTCGTCGAGGCGGTAGGCATGGGGGCGA 420176 Query 146183 CCAGCAAAGAGTTTCTCACGCCGTGTCTTTG-AATCTT 146219 ||||| ||||| | || ||||| ||| | |||||| Sbjct 420177 GGAGCAAGGAGTTGCGCAGACCGTG-CTTGGCAATCTT 420213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499028759520