Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq226 104 2e-17 seq1 84.2 2e-11 >seq226 Length=271753 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || ||||| || || || ||||| ||||| || ||||| Sbjct 170163 ATACCACCACGGAGGCGAAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCC 170104 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || |||| ||| ||||| || || || || | || | || |||||||| || Sbjct 170103 GAGAGGGTTCGGCCATCTTCCAACTGCTTACCAGCAAAGATAAGGCGCTGCTGGTCAGGG 170044 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || || || || || || |||| || | || | ||||||||||||||| Sbjct 170043 GGAATACCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAAGACTC 169985 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || || ||||| ||||| || ||||| || ||||| Sbjct 169984 CACCTCGAGGGTGATGGTCTTACCGGTCAGAGTCTTGACAAAGATCTGCAT 169934 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | | ||| || |||| || || ||||| || || ||||| || Sbjct 170847 ATACCACCGCGGAGGCGAAGCACAAGGTGCAAGGTGGACTCCTTCTGAATGTTATAGTCC 170788 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || ||| || | || |||||||| | || | ||||||||||| || Sbjct 170787 GAGAGCGTGCGGCCATCCTCGAGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGG 170728 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || || ||||| || |||| || | || | |||||| |||||||| Sbjct 170727 GGAATACCTTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCAATGGTGTCTGAAGACTC 170669 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || | || ||||| || || || || ||||| || ||||| Sbjct 170668 GACCTCGAGCGTGATTGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 170618 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | ||| || ||||| ||||| || ||||| ||||| || ||||| Sbjct 171075 ATACCACCGCGCAGTCGCAAAACGAGATGGAGCGTAGACTCCTTCTGGATGTTGTAATCC 171016 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || || | || ||||||||| | || | ||||||||||| || Sbjct 171015 GAAAGCGTCCGTCCGTCCTCGAGCTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCAGGA 170956 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || || || ||||| || |||| || | |||||||||||||| Sbjct 170955 GGAATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCGGAAGACTCA 170896 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || ||||| || || || || ||||| || ||||| Sbjct 170895 ACCTCGAGCGTGATTGTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 170846 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | | ||| || |||| || || ||||| || || ||||| || Sbjct 170391 ATACCACCGCGGAGGCGAAGCACAAGGTGCAAGGTGGACTCCTTCTGAATGTTATAGTCC 170332 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || ||| || | || |||||||| | || | ||||||||||| || Sbjct 170331 GAGAGCGTGCGGCCATCCTCGAGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGG 170272 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || || ||||| || |||| || | || | |||||| |||||||| Sbjct 170271 GGAATACCTTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCAATGGTGTCTGAAGACTC 170213 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || | ||| | || ||||| || | || || ||||| |||||||| Sbjct 170212 GACCTCCAAAGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 170162 >seq1 Length=1882320 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || |||||||| || || || || ||| | ||| || ||| Sbjct 161289 ACGAGGTGGAGAGTGGATTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCC 161348 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || || | || | ||| |||||||| || || || || || || || ||| Sbjct 161349 AGCTGCTTGCCGGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGA 161408 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || |||| || | || | |||||| ||||||||||||||||| |||| || || Sbjct 161409 ATCTTGGCCTTGA-CGTTGTCAATGGTGTCCGAAGACTCGACTTCGAGGGTAATGGTCTT 161467 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || || ||||| |||||||| Sbjct 161468 ACCTGTCAAGGTCTTGACAAAGATTTGCAT 161497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001516288080