Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq79 199 5e-46 seq236 138 1e-27 seq288 129 7e-25 >seq79 Length=472637 Score = 199 bits (220), Expect = 5e-46 Identities = 1125/1778 (63%), Gaps = 49/1778 (3%) Strand=Plus/Plus Query 115528 AACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCC 115587 ||||| |||| |||| || ||| | || ||||| || | || |||||||||||| Sbjct 419723 AACTGGATGGCGCTCGATGCGGGCTTGGTACGCAGGTAATAGGTACCGGTCTTGAGCCCC 419782 Query 115588 TGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGAAG 115647 | ||||||| | || | |||||||| | | || | | || ||| | | | Sbjct 419783 TTCTTCCAGCCGTAAAAGTGCATTGAAGTAAGCTGGCCAAAGGTGGGAGCCGAGAGGTGG 419842 Query 115648 AGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACA 115707 | ||| | || || || ||||||| || || || || ||||| || || | Sbjct 419843 ATGTTGAGCGACTGTGACTGGCAGATGAAGGCGCCTCGGTCGGCGGCCATGTCGATGATG 419902 Query 115708 TCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCC 115767 |||| |||| |||||||| || |||| || ||||| || || || ||| | Sbjct 419903 GCCTTTTGGCTGATCTCCCACACGGTCTTGTAAAGCTTCTTGATGCGGTCGGGAATACCG 419962 Query 115768 ACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTTCATA---TCCTTTGAC 115824 | ||| ||||| |||||||| || ||| | | |||||| || || | Sbjct 419963 GGCACATTCTGGATCGAGCCACCGTGGGCGATGATGCGGTTCTTCATCGTGTCGTT---C 420019 Query 115825 CAGAGACCAATCTTCTTGAGATCCTCCACGAG------GTGCTTATTGACAACAACAAAC 115878 || ||||| || || || | ||| ||| | | ||| || || ||| Sbjct 420020 CACAGACC---CTGCTCGACAAGCTCGCGGAGCAACCAGGGGTTA---ACCACCTGGAAC 420073 Query 115879 TCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTG 115938 || || ||||| || | | |||||||||| ||||| |||||||||||||| ||| Sbjct 420074 TCTCCGGCGAGCACACGGCGCGAGTAGATGTTGGATGTGTACGGCTCAAAGCACTCGTTG 420133 Query 115939 TTACCCAAGATTTGGGCT-GTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCG 115997 | || ||| | | || || ||||| || |||||||| || | ||| | | |||||| Sbjct 420134 A-AGCCGAGAATCTGACTCGTCGAGGCGGTAGGCATGGGGGCGAGGAGCAAGGAGTTGCG 420192 Query 115998 GAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTC 116057 ||||| | ||| ||||||| | ||||||| | | | || Sbjct 420193 CAGACCGTGCTTGGCAATCTTGGCCTTGAGCTCAGCCCAGTCCCACAGGTCCGATGGGGT 420252 Query 116058 CCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTC 116117 | ||||||| ||| |||| || ||| || || || ||||| || | | ||||| Sbjct 420253 GACACCCCACATGTCATACTGCAGCTCACCCTGCGAAGCAGGCGAGCCGGCGTACGTCTC 420312 Query 116118 ATATGGGCCCTCAACCTCCGCCAATTCGGA-GCTCGCCTCGAGGGCTGCGTGATACATTG 116176 || | ||| | | | |||| ||| | | |||| ||||| || ||||| || || | Sbjct 420313 GTACGTGCCGTGCTCTTGAGCCAGCTCGCACGATCGC-TCGAGCGCAGCGTGGTAAATAG 420371 Query 116177 TCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCG-AGACGGCAC 116235 ||||||| || | | || | | |||||| || || |||||| || | || Sbjct 420372 TCTCAAAGATCTGCACGTTAAGTCGGCGAGCCTCGGGCGACTCGAACGCGTAGCC--CAT 420429 Query 116236 AAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATT 116294 | || || | || || ||||| || ||||||| || || || || || | ||| || Sbjct 420430 GATCATGAAGGCGTCAGCAAGACCCTGAACACCGATACCGATGGGTCGGTGGCGCATGTT 420489 Query 116295 AGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 116354 || | ||||| ||| ||||| || | || | ||||| | | | || || || || Sbjct 420490 GGATCTGCGAGCTTCCTCGACGGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTCTT 420549 Query 116355 GGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT 116414 | || |||| | | | || || | | || | | || | | Sbjct 420550 GCAGATGGCCTTGGCAACCTTGTGGAGACGCTTAAAGTCGTACGTCTTGGTGACCGGGTC 420609 Query 116415 GACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGT 116474 || | || | || || || || || || || || ||||||| | ||| || || | Sbjct 420610 GATAAACGTGGGCAGCGCAATCGAGGCAAGGTTGCACACAGCGACCTCGTCTGGCGCACT 420669 Query 116475 GTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 116534 |||||| || || || ||||||| || || | ||| |||||||| | |||||| || || Sbjct 420670 GTACTCGATGATCTCGGTACACAGGTTGGAGCACTTGATGGTGCCGAGGTTCTTCTGGTT 420729 Query 116535 TGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGA 116594 ||| ||| |||||||||||||| || | || | || ||||| || || || Sbjct 420730 GCTCTTGCGGTTGGCAGCATCCTTGTAGAGGATGAACGGGTTACCAGTCTCGGTCTGCGA 420789 Query 116595 CTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCT 116653 || ||| || || | ||| | | || | | || | || ||| |||| || ||||| Sbjct 420790 CTCGAGGATGGCGTACCAGAGCTTCTGAGCCTTG-ACGGTGCGCTTGGAACGACCCTCGG 420848 Query 116654 CCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGT 116712 ||||||| ||||||| ||||||||| ||| ||| ||| || | || || || Sbjct 420849 CCTCGTAGCGCTCGTAGAGGCGCTCAAACTCGTCA-CCATAGCAGTCGGCAAGACCGGGG 420907 Query 116713 GCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGG 116772 || | || || | ||| ||||| | || || ||| |||| ||||||||||||| Sbjct 420908 CACTCGTTGGGGCACATGAGCGACCAGTCTCCGTTCTGCTCGACCCTCTTCATGAAGAGG 420967 Query 116773 TCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTG 116832 || || | |||||| || ||||||| || || || | || || | || || || Sbjct 420968 TCGGGAACCCAGAGTGCGTAGAAGAGCTCTCGGGCACGCACCTCCTCCTTACCGTGGTTC 421027 Query 116833 AGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATT 116892 || | || | || || | | ||||| |||||| || || | ||| | || | Sbjct 421028 TTGCGGAGGTCGAGGAACTCGAACACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAG 421087 Query 116893 GACCCCTTGCGACG------ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACG 116946 | || | |||| ||| |||||| || || | ||||| ||| || ||| Sbjct 421088 GCACC---GGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCCGTGTTGTTGAAGACG 421144 Query 116947 CGAAGCATTGGAATGATACCAT--CAGATTGGCCATTTGTCCCCCGAA--TACGAGACTT 117002 |||||||| || | |||||| | | || || || || || || |||||| | Sbjct 421145 CGAAGCATGGGCACGATACCGTTGCTGA--CACCGTTGGTGCCGGCAATGTACGAGCC-- 421200 Query 117003 GTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGC 117062 | ||| || |||||||| | ||| ||||| || || ||| ||||| || Sbjct 421201 AGTACCTCGGATGCAGTGGATGTTGAGACCGATACCACCGGCAGTCTTGGAGATCATGGC 421260 Query 117063 GCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAA 117122 || | |||| || ||||||| |||||||||||||| |||| | | || |||||| Sbjct 421261 ACAGGTCTTGAGGGTGTCGTAGATGCCATCGATCGAGTCGTCCTTCATGGTGACGAGGAA 421320 Query 117123 GCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGAT 117182 || ||| | || || |||||| || ||||||||||| || || | |||||| | Sbjct 421321 ACACGACGAGAGCTGGGGGTGTGGTGTCCCGGCGTTGAAGAGAGTGGGCGAAGCGTGGGT 421380 Query 117183 GAA-CATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGT 117241 || || | || ||||| | |||||| || | | | ||||| | |||| Sbjct 421381 AAAGCACTTC-TGCGACATGAGGTTGTAGGTTTCGATGGCGCTCTCGATGTCCTGGCCGT 421439 Query 117242 GAATACCGATTGAGACCCGCATAAACATGTATTGGGGT 117279 | ||||||| | ||| ||||| | ||||| |||||| Sbjct 421440 GGATACCGACGGCGACACGCATGAGCATGTGCTGGGGT 421477 >seq236 Length=132806 Score = 138 bits (152), Expect = 1e-27 Identities = 131/166 (79%), Gaps = 1/166 (1%) Strand=Plus/Plus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || |||||||||||||||||| ||||||||||| || |||||| ||||| Sbjct 3626 AGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGTTCGTTGGAGAAGGTGAGACC 3685 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||| ||||| |||||||| | |||||| || | || ||||||||||||||||| Sbjct 3686 GGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCAGAGAAGAAGAT 3745 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG-AGCG 127683 ||||| || || || |||| ||||||||||| |||| |||| Sbjct 3746 GCCCTCAACGGCGGCAAAGGCAACGAGACGCTCGGCGAAGGTAGCG 3791 >seq288 Length=590259 Score = 129 bits (142), Expect = 7e-25 Identities = 261/382 (68%), Gaps = 8/382 (2%) Strand=Plus/Plus Query 176596 CTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGA 176655 |||||| || || || |||||| || || | ||||| |||||||||||| || || || Sbjct 298435 CTTGAGCAGCGACGGATAGAAGTGGTCGAGGAAATTGATGATGAGACCCTTGATATGAGA 298494 Query 176656 ACCATCGTTATCCGCATCCGTCATAATCATGAGCCGACCATAGCG-AAGCTCGGAAACAT 176714 |||||||| |||| ||| ||||| ||||||| | || || || ||||| | || | Sbjct 298495 ACCATCGTGATCCTGATCGGTCATGATCATGATACTTCCGTAACGCAAGCT-GTTGACGT 298553 Query 176715 CTTGATAATCCTTACCTTGTTGAAGACCCAAAATCTTCTTGAGATCATTGAACTCTTGGT 176774 | |||| | ||| || ||||| ||||| | ||||| ||||| | |||| || | Sbjct 298554 CAAGATATTGCTTGCCGTGTTGCAGACCAAGAATCTCCTTGATGGCCTTGATTTCGGCAT 298613 Query 176775 TTGATGTGAGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGA 176834 | ||| ||| | || || |||||||| || | ||| || || || |||| Sbjct 298614 TCTTCATGATTTGGTCGTGAGAGGCCTCGCGGACGTTGAGAAGCTTACCTCGAAGCGGGA 298673 Query 176835 ACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGG 176894 | |||||||||| || | || || | | ||| | || ||||| | ||| || | Sbjct 298674 AAACACCGTAGTTGTCTCTTCCTACTTCGACAATACCGGACACGGCGAGAGACTTGGCTG 298733 Query 176895 AATCACCCTCCGTCACGATGAGCGTACA---CTTTCCAGATTGTGCCGTCCCCGCCTTGT 176951 | ||||| || || | |||||| ||||| |||| | | |||| || || |||| Sbjct 298734 AGTCACCTTCGGTGAGGATGAGGGTACAGTCCTTTGC-TTTCCTGCC--ACCAGCATTGT 298790 Query 176952 TCGCATCGTCCAACTTGGGAAT 176973 | || || |||| ||||||||| Sbjct 298791 TGGCGTCCTCCAGCTTGGGAAT 298812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613504914685680