Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq79 158 2e-33 >seq79 Length=472637 Score = 158 bits (174), Expect = 2e-33 Identities = 335/491 (68%), Gaps = 12/491 (2%) Strand=Plus/Plus Query 203845 CACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTT 203904 || ||| ||||| |||||| || || ||| || | | ||| || || | |||||||| Sbjct 419716 CAGCGTAAACTGGATGGCGCTCGATGCGGGCTTGGTACGCAGGTAATAGGTACCGGTCTT 419775 Query 203905 TAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGC 203964 || ||||||| ||| ||||| | |||||| |||| || | || | | |||| | | Sbjct 419776 GAGCCCCTTCTTCCAGCCGTAAAAGTGCATTGAAGTAAGCTGGCCAAAGGTGGGAGCCGA 419835 Query 203965 CATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATAT 204023 | ||| ||||| || ||||| ||| |||||| |||||| || || |||||||| | Sbjct 419836 GAGGTGGATGTTGAGCGACTGTGACTGGCAGATGAA-GGCGCCTCGGTCGGCGGCCATGT 419894 Query 204024 TGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG-AACACGTCTCTGGTGTGTTGA 204082 ||| |||| ||| || ||||||||||| |||||| || | ||| || || | | Sbjct 419895 CGATGATGGCCTTTTGGCTGATCTCCCACACGGTCTTGTAAAGCTTCT-TGATGCGGTCG 419953 Query 204083 GGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCA---GTCTCATCCTCGT 204138 || | | | ||| | || ||||||||| || ||| || | | || || |||| Sbjct 419954 GGAATA-CCGGGCACATTCTGGATCGAGCCACCGTGGGCGATGATGCGGTTCTTCATCGT 420012 Query 204139 CTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTG 204198 || | ||||| ||| | || ||||| || | || |||||| | | ||| Sbjct 420013 GTCGT---TCCACAGACCCTGCTCGACAAGCTCGCGGAGCAACCAGGGGTTAACCACCTG 420069 Query 204199 AAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTC 204258 || ||||||| ||||| | || | | | | |||| ||| | || || || ||| Sbjct 420070 GAACTCTCCGGCGAGCACACGGCGCGAGTAGATGTTGGATGTGTACGGCTCAAAGCACTC 420129 Query 204259 GTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTT 204318 |||| ||||| ||||||| || ||| || |||||||| || ||||||| |||||| Sbjct 420130 GTTGAAGCCGAGAATCTGACTCGTCGAGGCGGTAGGCATGGGGGCGAGGAGCAAGGAGTT 420189 Query 204319 GCGCACACCGT 204329 ||||| ||||| Sbjct 420190 GCGCAGACCGT 420200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795152238046880