Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1 132 5e-26 seq226 122 1e-22 seq247 100 3e-16 >seq1 Length=1882320 Score = 132 bits (146), Expect = 5e-26 Identities = 149/197 (76%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| ||||||||||| |||||||| Sbjct 79404 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGACCGTCCTCGAGCTGCTTACCGGCGAA 79345 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | |||||||||| |||||| ||||| ||| Sbjct 79344 GATAAGTCGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 79286 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || ||||| || | |||||||| || ||||| || || || | Sbjct 79285 TGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTCTTACCCGTAAGGGTCTTCA 79226 Query 46581 CAAAGATTTGCATTTTG 46597 ||||||| ||||| ||| Sbjct 79225 CAAAGATCTGCATGTTG 79209 Score = 109 bits (120), Expect = 6e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || ||||||||||| || ||||| |||| || |||||||||||||| || Sbjct 161307 TCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAG 161366 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||||||||| | || | | |||||||||| ||||| ||||| ||| Sbjct 161367 ATGAGTCGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTT 161425 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || || || || | || ||||| || || |||| || || || Sbjct 161426 GTCAATGGTGTCCGAAGACTCGACTTCGAGGGTAATGGTCTTACCTGTCAAGGTCTTGAC 161485 Query 46582 AAAGATTTGCAT 46593 |||||||||||| Sbjct 161486 AAAGATTTGCAT 161497 >seq226 Length=271753 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 ||||| || ||||| | ||| |||||| ||||| ||||| || || || || || || Sbjct 171060 CGCAAAACGAGATGGAGCGTAGACTCCTTCTGGATGTTGTAATCCGAAAGCGTCCGTCCG 171001 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||||||||| || ||||| || | || |||||||| | || | | ||||||| Sbjct 171000 TCCTCGAGCTGCTTTCCTGCGAAAATGAGACGTTGCTGGTCAGGAGGAATACCCTCCTTG 170941 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| ||||| ||||| | | | ||||||| || || || || | |||||| Sbjct 170940 TCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCGGAAGACTCAACCTCGAGCGTGATT 170881 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| || ||||| || |||||||| ||||| Sbjct 170880 GTCTTGCCTGTGAGCGTCTTGACAAAGATCTGCAT 170846 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| || ||||| || |||||||| || || |||||||| || || ||||| | Sbjct 171289 ACGGAGCACAAGGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCCGAGAGCGTGCGGCC 171230 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || ||||||||||| || || || || | || |||||||| | || | | ||||| Sbjct 171229 ATCCTCGAGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTT 171170 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| ||||| ||||| | | | ||||| || || || |||| ||||| Sbjct 171169 GTCCTGAATCTTGGCCTTGACATTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGTGAT 171110 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| |||| || || |||||||| ||||| Sbjct 171109 GGTCTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 171074 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || || || || || | || || | |||||| || || || Sbjct 170125 CTCCTTCTGGATGTTGTAATCCGAGAGGGTTCGGCCATCTTCCAACTGCTTACCAGCAAA 170066 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | || | | |||||||||| |||||| ||||| ||| Sbjct 170065 GATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 170007 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || ||||| || | |||||||| || || ||||| || || | Sbjct 170006 TGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCGGTCAGAGTCTTGA 169947 Query 46581 CAAAGATTTGCAT 46593 ||||||| ||||| Sbjct 169946 CAAAGATCTGCAT 169934 Score = 104 bits (114), Expect = 3e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| || ||||| || |||||| || || || ||||| || || ||||| | || || Sbjct 170371 CACAAGGTGCAAGGTGGACTCCTTCTGAATGTTATAGTCCGAGAGCGTGCGGCCATCCTC 170312 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||| || || || || | || |||||||| | || | | ||||||||| Sbjct 170311 GAGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTTGTCCTG 170252 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 ||||| ||||| ||| | || | |||| || || || |||| |||||||| | Sbjct 170251 AATCTTGGCCTTGA-CGTTGTCAATGGTGTCTGAAGACTCGACCTCCAAAGTGATGGTCT 170193 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||| || || |||||||||||||| Sbjct 170192 TGCCAGTCAAGGTCTTGACAAAGATTTGCAT 170162 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 ||||| || ||||| | ||| |||||| |||||||||||||| || || ||||| | Sbjct 170604 CGCAAAACGAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCAGACAGGGTGCGGCCA 170545 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||| ||||| |||||||| || | ||||||||||| | || | | |||||| Sbjct 170544 TCCTCGAGTTGCTTTCCGGCGAAAATGAGACGCTGCTGGTCAGGAGGAATACCCTCCTTA 170485 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || |||||| |||| | | | || || || || || || | ||||| Sbjct 170484 TCTTGGATCTTGGCTTTGACATTGTCAATAGTATCCGAGGACTCGACCTCGAGTGTGATC 170425 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || || |||||||| ||||| Sbjct 170424 GTCTTACCAGTAAGGGTCTTGACAAAGATCTGCAT 170390 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| || ||||| || |||||| || || || ||||| || || ||||| | || || Sbjct 170827 CACAAGGTGCAAGGTGGACTCCTTCTGAATGTTATAGTCCGAGAGCGTGCGGCCATCCTC 170768 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||| || || || || | || |||||||| | || | | ||||||||| Sbjct 170767 GAGCTGCTTTCCTGCAAAGATGAGACGTTGCTGGTCAGGGGGAATACCTTCCTTGTCCTG 170708 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 ||||| ||||| ||| | | | ||||| || || || || | |||||| || | Sbjct 170707 AATCTTGGCCTTGA-CGTTGTCAATGGTGTCTGAAGACTCGACCTCGAGCGTGATTGTCT 170649 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || ||||| || |||||||| ||||| Sbjct 170648 TGCCTGTGAGCGTCTTGACAAAGATCTGCAT 170618 >seq247 Length=126104 Score = 100 bits (110), Expect = 3e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| ||||||||||| |||||||| Sbjct 71159 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAA 71100 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509 |||| |||||||||||||| || | | |||||| ||| ||||| Sbjct 71099 GATCAGGCGCTGCTGGTCGGGGGGAATACCCTCCTTATCCTGAATCTT 71052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565236294486960