Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq236 313 2e-80 seq1 120 3e-22 seq226 104 2e-17 seq247 102 8e-17 >seq236 Length=132806 Score = 313 bits (346), Expect = 2e-80 Identities = 407/553 (74%), Gaps = 11/553 (2%) Strand=Plus/Plus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||||||||||||| || | |||||||| | || |||||||||||| ||| || | Sbjct 3623 GCAAGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGTTCGTTGGAGAAGGTGAG 3682 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 |||||||| || || || || |||||||| || |||| |||||| ||| || ||||| Sbjct 3683 ACCGGGCATAAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCAGAGAAGAA 3742 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 || |||||| ||||| || || || || || |||||| |||| || || | | | | || Sbjct 3743 GATGCCCTCAACGGCGGCAAAGGCAACGAGACGCTCGGCGAAGGTAGC-GCGTCGGTCGC 3801 Query 133074 -GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGT 133132 ||||||||| || ||||| |||||||| || |||||| || || || |||| ||| Sbjct 3802 TGATCCAGCGAAGAGCCCAGTCGGCCTTCTCCTTGACGACGGGGATTGTCTCGACAGCG- 3860 Query 133133 TCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATA 133190 |||| | | | | | | || | || ||| | ||||||||||||||| ||| || Sbjct 3861 TCAA-AGAGGAACTCGCGCTGCTCGGGCTCGCGGATGTAGGTGTCGATGAGCAGCGAGTA 3919 Query 133191 CATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGAC 133250 | || ||| | ||||||||| ||| || || || || ||||| || |||||| | Sbjct 3920 GGTCTCGCTGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGC 3979 Query 133251 CACCTGCACTTCTTGAGC-GAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGG 133309 ||||||| || |||| |||||||||||| || || ||||||||||| |||||| | Sbjct 3980 GGCCTGCACCTC-GGAGCTGAAACGCTCGACAAGGTTCTCGTTGACGATACCGTCGGAAG 4038 Query 133310 CGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCA---AGCGCT 133366 ||||||| ||||| || ||||| |||||| || |||||||||| |||| | | Sbjct 4039 CGGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGACGCTCGTTGTGATTCAGCTTGTTGT 4098 Query 133367 CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGG 133426 |||| ||| | |||||||||||||| | ||||||| ||||||| || || ||||| | Sbjct 4099 CCCAATCGTGAAGATCCTTGGACAGGTCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCAG 4158 Query 133427 CTTTTTTGTACAT 133439 | || |||||||| Sbjct 4159 CCTTCTTGTACAT 4171 >seq1 Length=1882320 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || || || ||||| ||| |||| |||||| | | Sbjct 161497 ATGCAAATCTTTGTCAAGACCTTGACAGGTAAGACCATTACCCTCGAAGTCGAGTCTTCG 161438 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || || | ||||| |||||||| ||| | ||||| Sbjct 161437 GACACCATTGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGAATCCCCCCTGACCA 161379 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | || ||||| |||||||| |||| |||||||| ||||||||| Sbjct 161378 GCAGCGACTCATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACCCTTTCCGACTACAA 161319 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || |||||| | || || || | || || ||| | | ||||| Sbjct 161318 CATTCAGAAGGAATCCACTCTCCACCTCGTTCTCCGTCTTCGTGGCGG 161271 Score = 116 bits (128), Expect = 4e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || ||||| || ||||||||| | || || ||| | Sbjct 79210 AACATGCAGATCTTTGTGAAGACCCTTACGGGTAAGACCATCACCCTTGAGGTGGAGTCT 79269 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | |||| | || | || |||| ||||| |||||||| ||| | || Sbjct 79270 TCGGACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGA 79328 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | ||| || || ||||| || |||| |||||||| ||||| Sbjct 79329 CCAGCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGTCGCACCCTTTCGGACTA 79388 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| | || || || | ||||| ||| || | || || Sbjct 79389 CAACATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGTCTGCGTGGTGG 79439 >seq226 Length=271753 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || || ||||||||| |||| || ||| | || Sbjct 169934 ATGCAGATCTTTGTCAAGACTCTGACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCC 169993 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| |||||| | ||||| Sbjct 169994 GACACCATTGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCA 170052 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || ||| |||| || | || |||||| || ||||| Sbjct 170053 GCAGCGCCTTATCTTTGCTGGTAAGCAGTTGGAAGATGGCCGAACCCTCTCGGATTACAA 170112 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || || ||| | || || || Sbjct 170113 CATCCAGAAGGAGTCCACCCTCCATCTCGTCCTTCG 170148 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || |||||||| ||||| || ||||| |||| || ||| | || Sbjct 170846 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACAATCACGCTCGAGGTTGAGTCTTCC 170905 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || || | | || | || || | ||||| ||||| ||||| | ||||| Sbjct 170906 GACACGATTGACAATG-TCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCA 170964 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||||| ||| || || ||||| || |||| || || || || ||||| Sbjct 170965 GCAACGTCTCATTTTCGCAGGAAAGCAGCTCGAGGACGGACGGACGCTTTCGGATTACAA 171024 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | ||||| ||| | || |||| Sbjct 171025 CATCCAGAAGGAGTCTACGCTCCATCTCGTTTTGCG 171060 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| |||||||| | || |||||| | | Sbjct 171074 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACCATCACTTTGGAGGTCGAGTCTTCA 171133 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || || | ||||| || || |||||| | ||||| Sbjct 171134 GACACCATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGTATTCCCCCTGACCAG 171193 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | || || || ||||| || || | ||||| ||| ||||||||| Sbjct 171194 CAACGTCTCATCTTTGCAGGAAAGCAGCTCGAGGATGGCCGCACGCTCTCGGACTACAAC 171253 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| ||| || |||| | ||||| ||| | | ||||| Sbjct 171254 ATTCAGAAGGAGAGC-ACCTTGCACCTTGTGCTCCGTCTCCGTGGCGG 171300 >seq247 Length=126104 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 38267 CACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGA 38326 ||| || || ||||| ||| | || || ||| || | |||| | | | | |||| | Sbjct 70991 CACAGGTAAGACCATTACCCTTGAGGTGGAGTCCTCGGACACCATCGACAATGTTAAGGC 71050 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || || | || || ||||| |||||| ||||||| ||||| || || | ||| || || Sbjct 71051 CAAGATTCAGGATAAGGAGGGTATTCCCCCCGACCAGCAGCGCCTGATCTTCGCCGGTAA 71110 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 ||||| || |||| ||||||||| |||||||||||||| ||||| |||| || || Sbjct 71111 GCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTCCA 71170 Query 38447 TTTGGTGCTGCGTTTGAGAGGCGG 38470 | || || ||| || | || || Sbjct 71171 CCTTGTCCTCCGTCTGCGTGGTGG 71194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170936856320