Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq226 98.7 4e-15 >seq226 Length=271753 Score = 98.7 bits (108), Expect = 4e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || |||||||| || || || || || || || || || Sbjct 170390 ATGCAGATCTTTGTCAAGACCCTTACTGGTAAGACGATCACACTCGAGGTCGAGTCCTCG 170449 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | | ||| || || ||||||||||| || ||||||||||| || Sbjct 170450 GATACTATTGACAATGTCAAAGCCAAGATCCAAGATAAGGAGGGTATTCCTCCTGACCAG 170509 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | |||||| | || || ||||| || ||||| | || || | || || ||| Sbjct 170510 CAGCGTCTCATTTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTGTCTGACTACAAT 170569 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTG 391268 || | ||||| | || || || | || || ||||| Sbjct 170570 ATCCAGAAGGAGTCTACGCTCCATCTCGTTTTGCGACTG 170608 Score = 84.2 bits (92), Expect = 9e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || || || || || || || || || ||||| || || Sbjct 170846 ATGCAGATCTTTGTCAAGACGCTCACAGGCAAGACAATCACGCTCGAGGTTGAGTCTTCC 170905 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | || || ||||| || ||||| || ||||||||||| || Sbjct 170906 GACACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAG 170965 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | |||||| |||| || || || || || ||| | || | ||||||| || Sbjct 170966 CAACGTCTCATTTTCGCAGGAAAGCAGCTCGAGGACGGACGGACGCTTTCGGATTACAAC 171025 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTG 391268 || | ||||| | || || || | || || ||||| Sbjct 171026 ATCCAGAAGGAGTCTACGCTCCATCTCGTTTTGCGACTG 171064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975710856460184