Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq112 416 4e-111 seq68 149 8e-31 seq232 116 5e-21 seq201 87.8 2e-12 >seq112 Length=645977 Score = 416 bits (460), Expect = 4e-111 Identities = 788/1150 (69%), Gaps = 10/1150 (1%) Strand=Plus/Minus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||||| | |||||||| ||||| | || || || ||||| ||||| |||||||| Sbjct 464757 TCACCCGAAAGAATGGCGGCCTGGACGGCGGCACCATAGGCGACGGCCTCGTCGGGGTTG 464698 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 |||| || || || || || || || | || | | | | |||| ||| ||| Sbjct 464697 ATCGACTTGTTGAGCTCGCGGCCATTGAAGAAGTCAGTAAGGAGCTTCTGAACTTTGGGG 464638 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || || ||||| || | || || || | || || |||||||| ||| Sbjct 464637 ATACGGGTGGAGCCACCAACAAGGACAATCTCGTGGACGGAACCCTTGTCGATCTTGGAG 464578 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACG-GAACAAGTCCATACACAGTTC 7248 || || || || || || || || || | | || ||| | ||| || || || Sbjct 464577 TCACGGAGAACCTTCTCAACGGGCTCGATGG-TGTGCGAGAAGAGGTCACCGCAAAGCTC 464519 Query 7249 CTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAAT 7308 ||| ||||| |||||||| ||||| || ||||| || | || ||| | | ||| || || Sbjct 464518 CTCGAAACGGGCACGGGTGATGGAGGTGTAGAAGTCGATACCCTCGAAGAGCGAGTCGAT 464459 Query 7309 TTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCG 7368 || || || || || || | ||| || | || ||||| || |||||||| || || || Sbjct 464458 CTCGATCGTGGTCTGGGCGGCCGATGAGAGAGTGCGCTTAGCACGCTCACAGGCGGTGCG 464399 Query 7369 TAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTC 7428 | |||||| || ||||| | ||||| || | ||| ||||| | || || || ||||| Sbjct 464398 GAGACGACGGAGAGCACGAGCGTTACTGGTGAGATCCTTCTTGTTCTTGCGCTTGAACTC 464339 Query 7429 TTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCC 7488 | |||||| | ||| | ||||| || |||||||| | ||| || || || Sbjct 464338 CTGGACGAAGTGGTTGACGAGACGGTTGTCGAAGTCCTCACCACCAAGGTGGGTGTCACC 464279 Query 7489 CGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGT 7548 ||||| || || || || |||||||| | |||||| | | | ||| |||||||| || Sbjct 464278 AGCGGTAGCCTTCACCTCGAAGATACCCTCCTCAATGGTGAGAAGCGAGACATCAAAGGT 464219 Query 7549 ACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACC 7608 ||| || || || || || ||||| |||||| | ||| | || | ||||| |||||||| Sbjct 464218 ACCTCCTCCGAGATCGAAGATGAGGACGTTCTTCTCGCCTTCGGTCTTCTTGTCGAGACC 464159 Query 7609 GTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACAGTTCAGGCCAGCAA 7667 ||| || || || || || || || || || || || || | ||| || ||||| | | Sbjct 464158 GTAGGCAATGGCGGCGGCAGTGGGCTCGTTGATGATTCGCATCACA-TTGAGGCCCGAGA 464100 Query 7668 TAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTA 7727 | | | ||||| || || || ||||| ||||| |||||||||||||| ||||| || | Sbjct 464099 TGATACCGGCATCCTTGGTAGCCTGTCGCTGCGAGTCGTTAAAGTAGGCAGGGACGGTGA 464040 Query 7728 CGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAA 7787 |||| || ||| |||| | ||| || || | || ||| | || ||| ||| | Sbjct 464039 CGACAGCATCCTTGACGGTGCCACCAAGGTAGGCCTCGGCGGTCTCACGCATCTTGAGGA 463980 Query 7788 GAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTT 7847 ||||||| || || ||||| || | | || ||| | ||||| || | || | Sbjct 463979 GAACCATGGAAGAGATCTCCTCGGGAGTGAAGGTCTTCTTCTCACCCTTGTACTCGATGC 463920 Query 7848 CAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGT 7907 ||| |||| | || | | |||| || |||||| | | ||| | ||||||||| Sbjct 463919 GGATC-TGGGGCTTGCCACCG-ACCGAGG-TAACCTCGAAGGGCCAGTGCTTCATATCGG 463863 Query 7908 CTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGT 7967 || |||| ||| ||||| | ||||| |||||||| ||||| || || |||| Sbjct 463862 ACTGAACCTCGGCGTCGTCGAACTTACGACCGATCAGACGCTTGGCATCGAAGACGGTGT 463803 Query 7968 TTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTT 8027 | | |||||||||||| |||||||| || || || ||||| ||||| || | Sbjct 463802 TGTGGGGGTTCATGGCGACCTGGTTCTTGGCAGCATCTCCGATGAGACGCTC---CGAGT 463746 Query 8028 CCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTA 8087 | || || || || || || ||||| || || || || |||||||| || || | || | Sbjct 463745 CGGTGAAGGCAACATATGAGGGGGTGGTGCGGTTACCCTGGTCGTTAGCGATGACCTCGA 463686 Query 8088 CGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTG 8147 | |||||||||||||||||| |||| || || || || || || | ||| ||||| || | Sbjct 463685 CACGGTCGTTTTGCCAGACGGCGACACAGGAGTAAGTAGTACCAAGATCGATACCAATGG 463626 Query 8148 CTTGAGTCAT 8157 | | |||||| Sbjct 463625 CCTTAGTCAT 463616 >seq68 Length=315608 Score = 149 bits (164), Expect = 8e-31 Identities = 456/695 (66%), Gaps = 24/695 (3%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| ||||| || || | ||| || || || ||||| || ||||| || | || Sbjct 19306 TCGAAGTCTTCGCCGCCGAGGTGGGTGTCGCCTGCGGTGGCGAGCACTTCGAAAACGCCC 19247 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || || | | || || || || ||||||||||||| ||| | | || | Sbjct 19246 GAGTCGATAGAGAGTAGGGAGACGTCGAAGGTACCACCACCCAAATCATAGACGATAATC 19187 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | || || ||| | | |||||||| | || ||||| || || ||||| || || ||| Sbjct 19186 TGCG-AT--TCGCCATCCTTCTTATCCAACCCATACGCAATCGCTGCCGCAGTAGGCTCA 19130 Query 7637 TTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || | ||| | || ||| |||| |||||||| || ||||||| || ||||| |||| Sbjct 19129 TTCACAATCCTCAACACA-TTCAACCCAGCAATCGTACCCGCATCCTTAGTCGCCTGTCT 19071 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 |||| ||| ||||| || ||||| ||||| || || || | ||| || ||||| || | Sbjct 19070 CTGCGCATCATTAAAATACGCCGGCACCGTCACCACGGCATGCGTCACCTTCTTTCCCAA 19011 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 ||||| ||||| | || ||||| || | ||||||| |||| ||| || | || Sbjct 19010 ATACGCCTCCGCCGTCTCCTTCATCTTCTGCAACACCATCGCAGAAACCTCCTCTGGCGT 18951 Query 7816 AAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGG 7875 |||| || || || | || | | || | |||| ||| || || || Sbjct 18950 AAACACCTTGGTCTCCGCATTCACACTAAGCTGAATCGCGGGCTT-TC--CATTTTTTTC 18894 Query 7876 GATAACCTTATACGACCAATCTTT--CATATCGTCTTGGACCTGTTGGTCCGAAAACTTT 7933 | | |||| ||| || ||| ||| | || || | | | || | || Sbjct 18893 AACCAGCTTAAACGGAAGATGTTTGGCATCTTTCCTCAGATCGG--GCTCGCCCCATTTG 18836 Query 7934 CTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTC 7993 | ||||| ||||| || |||||||| | || |||| ||| || ||| | ||| || Sbjct 18835 CGACCGATGAGACGTTTGGCATCAAAGATGGTATTTTCGGGATTTTGGGCGGCTTGATTT 18776 Query 7994 TTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTC 8053 || || ||||| ||||| |||||||| | || |||||||| || ||||| Sbjct 18775 TTGGCAGCGTCGCCGATGAGACGTTC------GGGGGAGAAGGCGACGTAGGAGGGGGTG 18722 Query 8054 GTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCG---GTCGTTTTGCCAGACGCCG 8110 | ||||| ||||| ||||| | || ||||||||||| || | |||| | || | Sbjct 18721 ATGCGATTTCCTTGATCGTTTGTGATGATTTCTACGCGACCGTTGATTTG---GGCGGCA 18665 Query 8111 ACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 |||||||| || || || || | || || ||||| Sbjct 18664 ACGCACGAGTAGGTGGTGCCGAGGTCGATGCCGAT 18630 >seq232 Length=221388 Score = 116 bits (128), Expect = 5e-21 Identities = 277/411 (67%), Gaps = 12/411 (3%) Strand=Plus/Plus Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||| ||||| |||||||| ||| | | ||| ||||| || | | | | ||| || Sbjct 68405 TCCTCGAAACGGGCACGGGTGATGTTGGCCTGGAAGTCAACACCCTGGAAGAGCGAGTCG 68464 Query 7307 ATTTCAATGGTTGTTTG--TGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCG 7364 | || | ||| || || || || || || | || ||||| || |||||||| || | Sbjct 68465 ACCTCGACGGTGGTCTGGGTGACG--GACGAGAGAGTGCGCTTGGCACGCTCACAGGCGG 68522 Query 7365 TTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAA 7424 || | ||| || | |||||| | || | || || || ||| | || || | || Sbjct 68523 AACGGAGACGTCGGACGGCACGGGCGTCGGCCGAGATGTCGAGCTTGTTCTTGCGCTCAA 68582 Query 7425 ACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAA-TCGAAATCTTCACCACCCAAGTGTGT 7482 |||| | |||||| |||| || | || || || || |||||||| | || || Sbjct 68583 ACTCCTTCTTGAAGTGGTCGA--GAAGCGCGTTGTCAAAGTCCTCACCACCAAGATGGGT 68640 Query 7483 ATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATC 7542 || || ||||| || ||||| | |||| ||| || ||||| | | ||||||||| Sbjct 68641 GTCACCAGCGGTGGCCTTGACGGCGAAGACACCACCGGTGATGTTGAGGAGCGAAACATC 68700 Query 7543 AAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG--TTCTTA 7600 || ||||| || || || || | ||||| |||||| | ||| |||| | || Sbjct 68701 GAAGGTACCTCCTCCGAGATCGTAGATGAGGACGTTCTTCTCG--GTCTCGGACTTGGAG 68758 Query 7601 TCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGA 7651 ||||||||||| ||||| || || || || || || || || ||||| ||| Sbjct 68759 TCGAGACCGTAGGCGATGGCGGCGGCGGTGGGCTCGTTGATGATACGGAGA 68809 Score = 113 bits (124), Expect = 6e-20 Identities = 280/422 (66%), Gaps = 6/422 (1%) Strand=Plus/Plus Query 7676 GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCG 7735 ||||| || || || | || ||||| |||||||||||||| ||||| || | ||| || Sbjct 69239 GCATCCTTGGTGGCAAGACGCTGCGAGTCGTTAAAGTAGGCGGGGACGGTGATGACGGCC 69298 Query 7736 TCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATC 7795 | | |||| | ||| |||| | | || ||||| || ||||| ||||| || ||||| Sbjct 69299 TTCTTGACCTCCTTGCCGATCTTGGCCTCGGCGATCTCCTTCATCTTGGTGAGGACCATG 69358 Query 7796 GATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATG 7855 || || ||||| | | | ||||| || || || ||| | || || || | | Sbjct 69359 GAGGAGATCTCCTGGGGGGAGAACTGCTTGGTCTCGCCGAGGTAGCTGACCTCGATGAAG 69418 Query 7856 GGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACC 7915 || | ||| | | ||| || | | | ||| | | ||| || | | ||| Sbjct 69419 GGGG-AGCCGT--CCTTGTCGATGACGGTGAAAGGCCAGTGCTGCATGTCCTTCTTGACG 69475 Query 7916 TGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGG 7975 | |||| | | ||||| ||||| || || || || || || | |||||| Sbjct 69476 TCGGGGTCGTCGTATCGGCGACCGATGAGACGTTTGGCGTCGAAGACGGTCTGCTTGGGG 69535 Query 7976 TTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAAC 8035 |||||||| | |||||||| || || || || || ||||| || | || || || Sbjct 69536 TTCATGGCGGCCTGGTTCTTGGCGGCATCGCCAATGAGACGCTC---GCTCTCGGTGAAA 69592 Query 8036 GCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCG 8095 ||||||||||| ||||| || || || || |||||||| || || || || || || ||| Sbjct 69593 GCGACGTACGAGGGGGTGGTGCGGTTACCCTGGTCGTTGGCGATGATCTCGACACGCTCG 69652 Query 8096 TT 8097 || Sbjct 69653 TT 69654 >seq201 Length=205543 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 7601 TCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGG 7660 ||||||||||| || | || || || || || || || || | ||| ||| || ||| Sbjct 178612 TCGAGACCGTAAGCAAGGGCGGCGGCGGTGGGCTCGTTGATGACACGGAGAACGTCAAGG 178671 Query 7661 CCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGG 7720 ||||| || | | ||||| || || || ||||| ||||| || || |||||||| || Sbjct 178672 CCAGCGATGGCACCAGCATCCTTGGTGGCCTGTCGCTGCGAGTCATTGAAGTAGGCGGGA 178731 Query 7721 ACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATA 7758 || || | ||| |||| | |||| |||| ||||| || Sbjct 178732 ACAGTGATGACGGCGTGCTTGACAGTCTTGCCGAGGTA 178769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635130434130320