Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq79 295 8e-75 seq236 145 9e-30 seq288 104 3e-17 >seq79 Length=472637 Score = 295 bits (326), Expect = 8e-75 Identities = 818/1234 (66%), Gaps = 33/1234 (3%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| ||||| |||||||||| || | || || || | Sbjct 421476 CCCCAGCACATGCTCATGCGTGTCGCCGTCGGTATCCACGGCCAGGACATCGAGAGCGCC 421417 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATG-TTCATCCACGCAACACCAACCCTCTT 111730 | || || ||| || ||||| | | || || | |||||| | || || ||||| Sbjct 421416 ATCGAAACCTACAACCTCATGTCGCA-GAAGTGCTTTACCCACGCTTCGCCCACTCTCTT 421358 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| || |||||| ||||| | || |||||||| | | | ||||| || Sbjct 421357 CAACGCCGGGACACCACACCCCCAGCTCTCGTCGTGTTTCCTCGTCACCATGAAGGACGA 421298 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || ||| ||||||| |||| ||| |||| |||||| ||||| ||| || || Sbjct 421297 CTCGATCGATGGCATCTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGACTGCCGG 421238 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTACA 111908 ||||||||| | ||||||| || ||| | | |||||| || || || Sbjct 421237 TGGTATCGGTCTCAACATCCACTGCATCCGAGGTACT--GGCTCGTACATTGCCGGCACC 421180 Query 111909 AATGGTCAATCAG--ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 111966 || ||| |||| | ||||| | || ||||||||||| || ||| ||| || |||| Sbjct 421179 AACGGTG--TCAGCAACGGTATCGTGCCCATGCTTCGCGTCTTCAACAACACGGCTCGCT 421122 Query 111967 ATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCAT 112020 | || |||| | ||| ||||| | || | | || |||| ||||||| | Sbjct 421121 ACGTCGACCAGGGTGGCAACAAGCGTCCC---GGTGCCTTTGCCATCTACATTGAGCCTT 421065 Query 112021 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGC 112080 ||||| ||||| | | |||||||| || | || ||||| ||| | ||||||| || Sbjct 421064 GGCACTCGGATGTGTTCGAGTTCCTCGACCTCCGCAAGAACCACGGTAAGGAGGAGGTGC 421005 Query 112081 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140 | ||| || ||||||| ||| |||||| |||| || |||||||||||||| || ||| Sbjct 421004 GTGCCCGAGAGCTCTTCTACGCACTCTGGGTTCCCGACCTCTTCATGAAGAGGGTCGAGC 420945 Query 112141 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTG 112199 ||| || | ||||| ||| | || || || || |||||||| |||| ||| | Sbjct 420944 AGAACGGAGACTGGTCGCTCATGTGCCCCAACGAGTGCCCCGGTCTTGCCGACTGCTAT- 420886 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCG-AC 112258 ||||| |||||||| ||||||| ||||||| || |||| | | ||| || Sbjct 420885 GGTGACGAGTTTGAGCGCCTCTACGAGCGCTACGAGGCCGAGGGTCGTTCCA-AGCGCAC 420827 Query 112259 GGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 112317 || | || | || | | ||| | || || ||| |||| || ||||||||||||| | Sbjct 420826 CGT-CAAGGCTCAGAAGCTCTGGTACGCCATCCTCGAGTCGCAGACCGAGACTGGTAACC 420768 Query 112318 CATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 112377 | | || || ||||| || || |||| ||||| || || ||||| | || | Sbjct 420767 CGTTCATCCTCTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTCGGCACCA 420708 Query 112378 TCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 112437 ||||| | |||||||| ||||| || ||| | || | | | ||| ||| |||| Sbjct 420707 TCAAGTGCTCCAACCTGTGTACCGAGATCATCGAGTACAGTGCGCCAGACGAGGTCGCTG 420648 Query 112438 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 112497 |||| ||||| || || || || || |||| || | | || || | || ||||| | | Sbjct 420647 TGTGCAACCTTGCCTCGATTGCGCTGCCCACGTTTATCGACCCGGTCACCAAGACGTACG 420588 Query 112498 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTG 112557 | | | | |||||| | ||| | || | || || ||||| |||| | || | Sbjct 420587 ACTTTAAGCGTCTCCACAAGGTTGCCAAGGCCATCTGCAAGAACCTCAACAAGATCATCG 420528 Query 112558 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 112617 | | || | |||||||| ||| ||||| | ||| || ||| | ||||| || || | Sbjct 420527 ACATCAACTACTACCCCGTCGAGGAAGCTCGCAGATCCAACATGCGCCACCGACCCATCG 420468 Query 112618 GTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT--TCTTTGTCGCCACGCATTTGATTC 112675 || ||||||| || ||||| || || | ||||| || | | || |||| || || || Sbjct 420467 GTATCGGTGTTCAGGGTCTTGCTGACGCCTTCATGATCATGG--GCTACGCGTTCGAGTC 420410 Query 112676 CGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGA 112735 ||| || | | || | || || |||||||| || || ||||| || || || Sbjct 420409 GCCCGAGGCTCGCCGACTTAACGTGCAGATCTTTGAGACTATTTACCACGCTGCGCTCGA 420350 Query 112736 GGCGA--GTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 112793 |||| || | ||| |||| | | | || | || || || | | || || || Sbjct 420349 -GCGATCGTGC-GAGCTGGCTCAAGAGCACGGCACGTACGAGACGTACGCCGGCTCGCCT 420292 Query 112794 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGG 112827 ||||| || || | ||| || | ||| ||||||| Sbjct 420291 GCTTCGCAGGGTGAGCTGCAGTATGACATGTGGG 420258 >seq236 Length=132806 Score = 145 bits (160), Expect = 9e-30 Identities = 128/160 (80%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 |||| || ||||| ||| | || ||||| |||||||| |||||||||||||| |||| Sbjct 3786 CCTTCGCCGAGCGTCTCGTTGCCTTTGCCGCCGTTGAGGGCATCTTCTTCTCTGGCTCCT 3727 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 || | | || | |||||||||||||| ||||| ||||| |||||| ||||||||||| Sbjct 3726 TCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTTATGCCCGGTCTCACCTTCTCCAACG 3667 Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 | || ||||| ||||||||||| |||||| || ||||| Sbjct 3666 AACTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTGC 3627 >seq288 Length=590259 Score = 104 bits (114), Expect = 3e-17 Identities = 244/364 (67%), Gaps = 6/364 (2%) Strand=Plus/Plus Query 176706 AGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCAT 176765 |||||| || | | ||||| |||||||||||||| || ||||| |||| ||| || Sbjct 298452 AGAAGTGGTCGAGGAAATTGATGATGAGACCCTTGATATGAGAACCATCGTGATCCTGAT 298511 Query 176766 CCGTCATGATCATGAGACGACCATACCG-AAGCTCGGAAACATCTTGATAGTCCTTACCC 176824 | ||||||||||||| || || || || ||||| | || || |||| | ||| || Sbjct 298512 CGGTCATGATCATGATACTTCCGTAACGCAAGCT-GTTGACGTCAAGATATTGCTTGCCG 298570 Query 176825 TGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGTG 176884 ||||| ||||| | |||| ||||| | |||| || || ||| || | Sbjct 298571 TGTTGCAGACCAAGAATCTCCTTGATGGCCTTGATTTCGGCATTCTTCATGATTTGGTCG 298630 Query 176885 ACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCG 176944 |||||| || || || || | ||| || ||||| ||||| |||||||||| || Sbjct 298631 TGAGAGGCCTCGCGGACGTTGAGAAGCTTACCTCGAAGCGGGAAAACACCGTAGTTGTCT 298690 Query 176945 CGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACG 177004 | || || | | ||| | || ||||| | || || || ||||| || || | | Sbjct 298691 CTTCCTACTTCGACAATACCGGACACGGCGAGAGACTTGGCTGAGTCACCTTCGGTGAGG 298750 Query 177005 ATGAGTGTACACTTGCCAGATT--GTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGG 177062 ||||| ||||| | | || |||| ||| || ||||| || || |||| |||| Sbjct 298751 ATGAGGGTACAGTCCTTTGCTTTCCTGCC--ACCAGCATTGTTGGCGTCCTCCAGCTTGG 298808 Query 177063 GAAT 177066 |||| Sbjct 298809 GAAT 298812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620740087734560