Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq79 241 2e-58 seq13 109 6e-19 >seq79 Length=472637 Score = 241 bits (266), Expect = 2e-58 Identities = 1111/1741 (64%), Gaps = 49/1741 (3%) Strand=Plus/Plus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || || ||||| |||| || ||||| || |||||| |||| | |||||||||| Sbjct 419753 CGCAGGTAATAGGTACCGGTCTTGAGCCCCTTCTTCCAGCCGTAAAAGTGCATTGAAGTA 419812 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 || | | || || ||| | | | ||| | |||||| ||||| |||||| Sbjct 419813 AGCTGGCCAAAGGTGGGAGCCGAGAGGTGGATGTTGAGCGACTGTGACTGGCAGATGAAG 419872 Query 109528 CGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTG 109587 || || || || |||||||||||||| ||||||||| || ||||| || |||||| Sbjct 419873 GCGCCTCGGTCGGCGGCCATGTCGATGATGGCCTTTTGGCTGATCTCCCACACGGTCTTG 419932 Query 109588 TACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTC 109647 || | |||||||| |||||||| | | || || || |||||||| Sbjct 419933 TAAAGCTTCTTGATGCGGTCGGGAATACCGGGCACATTCTGGATCGAGCCACCGTGGGCG 419992 Query 109648 ACCATGAGATCCTTCATCTCTTTCGA-CCAGAGACCGACCTTTTTGAGATCGT----CAA 109702 | ||| | | ||||||| | ||| ||| ||||| || || ||| ||| Sbjct 419993 ATGATGCGGTTCTTCATCG-TGTCGTTCCACAGACCCTGCTCGACAAGCTCGCGGAGCAA 420051 Query 109703 CAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAG 109762 | || | || ||||| || || || || || || || ||||||||| | Sbjct 420052 CCAGGGG----TTAACCACCTGGAACTCTCCGGCGAGCACACGGCGCGAGTAGATGTTGG 420107 Query 109763 TCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCA 109822 ||||| || || || ||||| ||| ||| || || || || || || || |||| Sbjct 420108 ATGTGTACGGCTCAAAGCACTCGTTGAAGCCGAGAATCTGACTCGTCGAGGCGGTAGGCA 420167 Query 109823 TGGGAGCCATGAGAAGACTGTTTCGGAGACC---CTTCG---TCTTTACCC---GCTCA- 109872 |||| || | ||| | ||| || ||||| ||| | |||| || ||||| Sbjct 420168 TGGGGGCGAGGAGCAAGGAGTTGCGCAGACCGTGCTTGGCAATCTTGGCCTTGAGCTCAG 420227 Query 109873 CGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGT 109932 | || |||||| | | || || || |||| |||||| || Sbjct 420228 CCCA----GTCCCAC-----AGGTCCG----ATGGGGTGACACC---CCACATGTCATAC 420271 Query 109933 TGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCG 109992 || || |||||| | |||||| || || | | ||||||||| || | | | Sbjct 420272 TGCAGCTCACCCTGCGAAGCAGGCGAGCCGGCGTACGTCTCGTACGTGCCGTGCTCTTGA 420331 Query 109993 GCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTC 110052 |||| |||| | || ||| || || || || || ||||||||||| || || | || Sbjct 420332 GCCAGCTCGCACGATCGCTCGAGCGCAGCGTGGTAAATAGTCTCAAAGATCTGCACGTTA 420391 Query 110053 ATGAGGCGAGACTCTTCACAGTCGAAGG-GAAGACCACAAAGAATAAACACATCCGCTAG 110111 | |||||| ||| | ||||| | | || ||| | | | || | || || || Sbjct 420392 AGTCGGCGAGCCTCGGGCGACTCGAACGCGTAGCCCATGATCA-TGAAGGCGTCAGCAAG 420450 Query 110112 ACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTAC 110171 |||||||||||||| ||| ||||| || || |||||| || | ||||| || || Sbjct 420451 ACCCTGAACACCGATACCGATGGGTCGGTGGCGCATGTTGGATCTGCGAGCTTCCTCGAC 420510 Query 110172 GGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTC 110231 |||||| ||||| |||||||| | ||||| ||||| | | ||| | | | Sbjct 420511 GGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTCTTGCAGATGGCCTTGGCAACCTT 420570 Query 110232 ATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAAT 110291 ||||| | | ||| |||| || || || | || | | |||| || ||||| Sbjct 420571 GTGGAGACGCTTAAAGTCGTACGTCTTGGTGACCGGGTCGATAAACGTGGGCAGCGCAAT 420630 Query 110292 AGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACA 110351 || ||||| |||||||||| ||||||| | |||| || | || || ||||| Sbjct 420631 CGAGGCAAGGTTGCACACAGCGACCTCGTCTGGCGCACTGTACTCGATGATCTCGGTACA 420690 Query 110352 CAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATC 110411 || |||||| | ||| ||| || | ||||||||| || ||| |||| ||||| Sbjct 420691 CAGGTTGGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATC 420750 Query 110412 CTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA- 110470 ||| ||||| ||| | ||| ||||||| || ||||| |||| ||| ||||| | ||| | Sbjct 420751 CTTGTAGAGGATGAACGGGTTACCAGTCTCGGTCTGCGACTCGAGGATGGCGTACCAGAG 420810 Query 110471 CATCGGCGGCGGGGACAGTTGCG-TTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAG 110529 | || | || ||| | |||| || | |||| || ||||||| ||| | | Sbjct 420811 CTTCTG-AGCCTTGAC-GGTGCGCTTGGAACGACCCTCGGCCTCGTAGCGCTCGTAGAGG 420868 Query 110530 TCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGG 110589 |||||| || | || || || | |||||| || || ||| || | ||| Sbjct 420869 CGCTCAAACTCGTCACCATAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATGAGC 420928 Query 110590 GACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAG 110649 ||||| | ||| || ||| |||||||||||||| ||||| |||| ||| | || || Sbjct 420929 GACCAGTCTCCGTTCTGCTCGACCCTCTTCATGAAGAGGTCGGGAACCCAGAGTGCGTAG 420988 Query 110650 AAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCC 110709 || || || ||| ||| |||| || | ||| ||||| ||| || || | || || Sbjct 420989 AAGAGCTCTCGGGCACGCACCTCCTCCTTACCGTGGTTCTTGCGGAGGTCGAGGAACTCG 421048 Query 110710 ATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCC 110766 | | |||||||||||| || || | |||| || | || || ||| || Sbjct 421049 AACACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTGCCA 421108 Query 110767 GCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCG 110826 |||||| || ||||| || ||| |||||||| | ||||| || | || || | | Sbjct 421109 CCCTGGTCGACGTAGCGAGCCGTGTTGTTGAAGACGCGAAGCATGGGCACGATACCGTTG 421168 Query 110827 GATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATA 110886 ||| || || || ||| || | | | || ||| |||||| | | | Sbjct 421169 CTGACACCGTTGGTGCCGGCAATGTACGAGCCAGTACCTCGGATGCAGTGGATGTTGAGA 421228 Query 110887 CCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCATAAATACC 110945 || |||||||| || ||| || ||||| ||| |||| || | || || || Sbjct 421229 CCGATACCACCGGCAGTCTTGGAGATCATGGCACAGGTCT-TGAGGGTGTCGTAGATGCC 421287 Query 110946 ATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGT 111005 ||| ||||| || |||| ||| | || || || || || | ||| || | || || Sbjct 421288 ATCGATCGAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTGGGGGTGTGGTGT 421347 Query 111006 TCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAA-CAGACCTTGGGACATCTTGTTGT 111064 || || |||||||| || || | || || | || || | || ||||| ||||| Sbjct 421348 CCCGGCGTTGAAGAGAGTGGGCGAAGCGTGGGTAAAGCACTTC-TGCGACATGAGGTTGT 421406 Query 111065 ATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACA 111124 | || |||| ||| | || | ||||| ||||| | ||| || ||||||| || Sbjct 421407 AGGTTTCGATGGCGCTCTCGATGTCCTGGCCGTGGATACCGACGGCGACACGCATGAGCA 421466 Query 111125 T 111125 | Sbjct 421467 T 421467 >seq13 Length=403507 Score = 109 bits (120), Expect = 6e-19 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 11743 TCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAACAC 11802 ||||| || || | | || ||||| || |||||||| || || | | |||| || Sbjct 281836 TCACGCACTCGGCTAGGGCCGACACCGACAAACATCTCTACAAACTCGGAACCAGAG-AC 281778 Query 11803 TGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGT 11861 || | ||| || || || ||||||||| |||| |||||||| |||||||| || Sbjct 281777 GGACAAGAAAGGCACGCCAGCCTCACCAGCTGTGGCCTTGGCGAGGAGCGTCTTACCGGT 281718 Query 11862 ACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--ACTTCCAAAGTAG 11919 ||| |||| ||||| ||| | ||||||||| || ||||||||||| |||| ||| Sbjct 281717 ACCCGGTGGACCAGAGAGGATGGCGCCACGCGGAATCTTGGCACCGAGCTTC--TCGTAC 281660 Query 11920 CGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 || |||||||||||||| | |||| |||| | ||||||||||| Sbjct 281659 TTTTCGGGCTTCTTGAGGAAATTGACAAACTCCATGATCTCCTCCTTGGC 281610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588973806064400